Gene: Lsat_1_v5_gn_4_65500

General Information

Structural Information

  • Species Lactuca sativa
  • Gene Identifier Lsat_1_v5_gn_4_65500
  • Transcript Identifier Lsat_1_v5_gn_4_65500.1
  • Gene Type Coding gene
  • Location Lsat_1_v8_lg_4 : 103398625-103401290 : negative

Gene Family Information

  • ID HOM05D001007
  • #Genes/#Species 602/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Lsat_1_v5_gn_4_65500.v5
  • pacid 38933624

Descriptions

  • Description K12599 - antiviral helicase SKI2 (SKI2, SKIV2L)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1904278
ISO
PLAZA Integrative Orthologypositive regulation of wax biosynthetic process AT3G46960
GO:0090065
ISO
PLAZA Integrative Orthologyregulation of production of siRNA involved in RNA interference AT3G46960
GO:0006401
ISO
PLAZA Homology (enrichment)RNA catabolic process HOM05D001007
GO:0006813
ISO
PLAZA Integrative Orthologypotassium ion transport AT3G46960
GO:0000292
ISO
PLAZA Integrative OrthologyRNA fragment catabolic process AT3G46960
GO:0070478
ISO
PLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay AT3G46960
GO:0016441
ISO
PLAZA Integrative Orthologyposttranscriptional gene silencing AT3G46960
GO:0035864
ISO
PLAZA Integrative Orthologyresponse to potassium ion AT3G46960

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
ISO
PLAZA Homology (enrichment)nucleic acid binding HOM05D001007
GO:0005524
ISO
PLAZA Homology (enrichment)ATP binding HOM05D001007
GO:0003723
ISO
PLAZA Homology (enrichment)RNA binding HOM05D001007
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity AT3G46960

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0055087
ISO
PLAZA Integrative OrthologySki complex AT3G46960
GO:0005773
ISO
PLAZA Integrative Orthologyvacuole AT3G46960
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT3G46960

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012961 ATP-dependent RNA helicase Ski2, C-terminal
IPR025696 rRNA-processing arch domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
Mapman id Description
16.4.1.2.6.1 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.SUPERKILLER (SKI) regulation complex.RNA helicase component SKI2