Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 1.5e-109 399.8 244 100.0
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 1.5e-109 399.8 244 100.0
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 3.4e-45 186.0 260 61.5
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 3.4e-45 186.0 260 61.5
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 9.1e-43 177.9 193 60.1
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 2.9e-41 172.9 196 56.6
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 3.8e-41 172.6 198 57.6
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 5.0e-41 172.2 94 91.5
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 1.1e-40 171.0 196 56.1
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 1.5e-40 170.6 94 89.4
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 1.9e-40 170.2 94 89.4
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 3.3e-40 169.5 94 89.4
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 7.2e-40 168.3 192 59.9
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.2e-39 167.5 263 59.7
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 4.7e-39 165.6 95 89.5
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 4.7e-39 165.6 95 89.5
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 8.0e-39 164.9 207 56.0
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 1.4e-38 164.1 193 58.5
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 1.8e-38 163.7 94 89.4
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 2.3e-38 163.3 94 88.3
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 3.0e-38 162.9 95 86.3
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 3.0e-38 162.9 94 87.2
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 4.0e-38 162.5 94 87.2
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 6.8e-38 161.8 94 88.3
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 6.8e-38 161.8 94 86.2
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 1.2e-37 161.0 94 86.2
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 2.0e-37 160.2 94 84.0
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 2.0e-37 160.2 94 86.2
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 2.6e-37 159.8 94 86.2
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 2.6e-37 159.8 94 86.2
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 2.6e-37 159.8 94 86.2
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 2.6e-37 159.8 95 85.3
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 2.6e-37 159.8 94 86.2
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 3.4e-37 159.5 196 56.1
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 4.4e-37 159.1 94 85.1
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 9.8e-37 157.9 94 86.2
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 9.8e-37 157.9 193 56.5
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 1.3e-36 157.5 94 83.0
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 1.3e-36 157.5 94 83.0
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.7e-36 157.1 94 81.9
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.7e-36 157.1 94 81.9
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.7e-36 157.1 95 87.4
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 1.7e-36 157.1 212 54.2
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 2.2e-36 156.8 94 83.0
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 2.2e-36 156.8 94 81.9
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 2.2e-36 156.8 94 83.0
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 2.8e-36 156.4 94 83.0
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 2.8e-36 156.4 94 80.9
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 3.7e-36 156.0 95 83.2
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 3.7e-36 156.0 94 83.0
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 6.3e-36 155.2 94 81.9
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 1.1e-35 154.5 190 56.3
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 1.1e-35 154.5 185 55.1
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.4e-35 154.1 94 83.0
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 2.4e-35 153.3 189 55.6
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 2.4e-35 153.3 263 57.8
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 4.1e-35 152.5 265 53.2
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 4.1e-35 152.5 173 59.5
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 4.1e-35 152.5 94 80.9
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 7.0e-35 151.8 94 79.8
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 9.2e-35 151.4 98 77.6
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 9.2e-35 151.4 187 55.6
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 9.2e-35 151.4 197 53.3
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 1.2e-34 151.0 94 79.8
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 1.6e-34 150.6 189 57.1
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 1.6e-34 150.6 94 80.9
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 2.7e-34 149.8 170 58.8
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 2.7e-34 149.8 170 58.8
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 3.5e-34 149.4 187 55.6
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 7.8e-34 148.3 208 50.5
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 1.0e-33 147.9 190 53.7
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 1.0e-33 147.9 192 53.6
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 1.0e-33 147.9 192 53.6
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.0e-33 147.9 98 75.5
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.0e-33 147.9 98 75.5
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 1.3e-33 147.5 191 52.4
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.7e-33 147.1 94 77.7
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 2.3e-33 146.7 203 52.2
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 2.9e-33 146.4 174 55.7
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 2.9e-33 146.4 202 52.0
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 3.8e-33 146.0 99 77.8
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 5.0e-33 145.6 204 51.0
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 5.0e-33 145.6 204 51.0
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 5.0e-33 145.6 205 51.2
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 6.6e-33 145.2 190 53.2
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 6.6e-33 145.2 191 51.8
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 1.1e-32 144.4 199 52.3
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.1e-32 144.4 205 50.7
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 1.9e-32 143.7 192 53.1
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 1.9e-32 143.7 213 49.3
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.5e-32 143.3 193 54.4
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 2.5e-32 143.3 262 52.7
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 4.3e-32 142.5 95 74.7
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 5.6e-32 142.1 202 50.5
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.6e-32 142.1 193 53.4
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 5.6e-32 142.1 95 76.8
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 7.3e-32 141.7 196 52.6
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 7.3e-32 141.7 94 75.5
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 7.3e-32 141.7 179 55.3
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 9.5e-32 141.4 198 52.5
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 9.5e-32 141.4 193 52.3
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 9.5e-32 141.4 198 52.5
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 9.5e-32 141.4 193 52.3
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 1.2e-31 141.0 95 76.8
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.2e-31 141.0 203 54.2
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 1.6e-31 140.6 94 74.5
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 1.6e-31 140.6 94 76.6
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 2.1e-31 140.2 96 74.0
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 2.1e-31 140.2 96 74.0
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 2.1e-31 140.2 96 74.0
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 2.1e-31 140.2 94 75.5
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 2.8e-31 139.8 199 52.3
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 3.6e-31 139.4 94 74.5
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 3.6e-31 139.4 94 76.6
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 4.7e-31 139.0 94 75.5
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 6.1e-31 138.7 199 52.8
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 8.0e-31 138.3 95 72.6
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 1.0e-30 137.9 199 52.3
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 1.0e-30 137.9 200 51.0
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 1.8e-30 137.1 188 52.7
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 2.3e-30 136.7 193 52.3
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.3e-30 136.7 193 52.3
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 4.0e-30 136.0 186 50.5
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 4.0e-30 136.0 192 51.0
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 4.0e-30 136.0 96 74.0
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.2e-30 135.6 192 52.1
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 1.2e-29 134.4 201 47.8
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.2e-29 134.4 182 52.2
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 2.0e-29 133.7 94 74.5
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.4e-29 132.5 192 51.6
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 9.8e-29 131.3 95 73.7
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 1.7e-28 130.6 195 48.7
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 1.7e-28 130.6 267 48.7
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 2.9e-28 129.8 186 48.9
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 6.4e-28 128.6 94 71.3
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 2.0e-26 123.6 212 47.6
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 3.5e-26 122.9 94 68.1
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 6.0e-26 122.1 199 47.2
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 1.0e-25 121.3 95 66.3
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 2.3e-25 120.2 94 69.1
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 3.3e-24 116.3 212 45.3
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 1.6e-23 114.0 95 66.3
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 2.0e-21 107.1 205 44.4
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 7.5e-21 105.1 176 44.9
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 1.7e-20 104.0 63 79.4
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 7.0e-19 98.6 79 65.8
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.1e-18 97.1 99 54.5
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.6e-15 87.4 94 55.3
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 2.1e-15 87.0 91 54.9
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.4e-13 79.3 72 55.6
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 4.4e-13 79.3 186 41.4
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 4.4e-13 79.3 186 41.4
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 9.9e-13 78.2 95 51.6
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 4.9e-12 75.9 94 43.6
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.8e-07 60.1 170 34.7
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.8e-07 60.1 94 39.4
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 4.7e-07 59.3 169 34.9
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 4.7e-07 59.3 169 34.9
EL10Ac1g00433 Beta vulgaris HOM05D004370 ORTHO05D005084 6.8e-06 55.5 32 81.2


User provided reference genes

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