Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 0.0e+00 3781.1 1904 100.0
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 0.0e+00 2687.1 1924 71.5
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1570.4 1951 44.9
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1566.6 1951 44.4
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 1562.0 1957 44.5
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 1546.6 1954 44.0
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 1544.3 1949 45.0
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1530.8 1957 43.4
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1530.0 1968 44.2
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 1523.5 1958 43.5
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 1520.4 1963 43.9
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1513.4 1968 44.1
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 1513.0 1960 42.2
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1503.8 1956 43.5
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1495.7 1965 42.8
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 1493.4 2015 42.4
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 1492.6 1936 43.2
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 1490.3 1958 43.2
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 1484.5 1959 41.6
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1482.2 1825 45.3
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 1473.4 1949 42.6
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 1464.9 1958 42.1
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 0.0e+00 1463.7 1936 42.7
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 1456.0 1958 42.3
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 1455.3 1967 42.5
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 1450.6 1950 42.3
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 1423.7 1926 42.3
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 1423.7 1964 41.9
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1419.8 1959 41.2
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 1417.9 1952 41.9
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1417.1 1956 41.3
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1412.9 1960 41.2
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 1411.7 1946 41.0
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 1410.6 1960 41.6
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 1407.1 1961 41.8
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 1404.8 1937 41.4
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1404.8 1946 41.6
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 1404.4 1945 40.7
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 1404.0 1950 40.7
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 1401.3 1933 42.2
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 1399.4 1962 40.9
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 1398.3 1956 40.8
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1398.3 1970 41.1
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1395.2 1928 41.7
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 1393.6 1966 40.8
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1390.6 1951 40.9
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1390.6 1913 41.2
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1388.6 1960 40.8
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 1387.9 1943 40.5
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 1384.4 1959 40.8
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1383.6 1997 40.2
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 1382.5 1964 41.1
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 1379.0 1928 41.3
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1378.6 1952 40.3
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1377.5 1937 41.2
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1374.8 1942 41.2
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 1371.7 1938 41.1
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 1368.2 2002 39.9
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 1365.9 1943 39.9
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 1361.7 1954 40.3
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 1358.2 1967 40.8
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 1357.0 1924 40.9
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 1356.7 1940 39.3
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1351.3 1953 40.9
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1347.0 1952 40.8
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 1345.1 1952 40.4
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 1339.7 1809 42.3
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 0.0e+00 1338.2 1926 42.4
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 1333.9 1943 40.1
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 1333.9 1894 41.8
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1327.8 1882 40.6
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1323.1 1924 40.2
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 1322.8 1943 40.6
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 1322.8 1928 40.4
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1315.1 1944 40.2
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 1313.1 2034 38.3
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 1311.6 1935 39.9
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 1309.3 1940 39.8
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1308.5 1934 40.4
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1308.5 1927 40.5
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 1302.3 1978 39.3
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1297.7 1937 40.2
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1292.3 1946 39.7
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1292.3 1923 40.1
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1291.9 2127 37.3
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1290.8 1945 39.9
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1289.6 1923 40.0
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1283.1 1923 39.9
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1280.8 1936 39.8
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1279.2 1965 39.4
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 1255.4 1838 40.3
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 1245.0 1899 39.8
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 1234.2 1962 38.5
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1228.4 2442 33.2
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1210.3 1928 38.5
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1174.8 1942 37.9
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 2.1e-307 1060.1 1722 37.7
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 1.7e-298 1030.4 2069 33.5
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 1.6e-291 1007.3 2044 33.3
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 5.8e-286 988.8 1358 41.5
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 2.1e-283 980.3 1625 36.6
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 2.1e-280 970.3 1974 33.4
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 6.0e-267 925.6 1230 42.8
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 3.9e-250 869.8 1914 31.9
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 1.0e-229 802.0 1133 40.4
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 5.0e-221 773.1 1139 41.2
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 2.0e-214 751.1 903 45.3
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 2.4e-186 657.9 1129 35.8
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 1.4e-183 648.7 1713 29.1
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 2.7e-166 591.3 908 38.8
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 2.3e-165 588.2 752 45.7
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 2.7e-134 485.0 690 43.2
Dinv12246 Davidia involucrata HOM05D001072 ORTHO05D006807 1.3e-64 253.4 259 49.0
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 1.6e-62 246.5 551 29.8
Psat0s2465g0160 Pisum sativum HOM05D001072 ORTHO05D006807 9.3e-58 230.7 167 63.5
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 2.2e-51 209.5 216 44.0
Dinv12247 Davidia involucrata HOM05D001072 ORTHO05D006807 1.9e-50 206.5 180 61.1
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 4.6e-49 201.8 649 27.9
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 2.3e-48 199.5 217 44.7
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 3.4e-44 185.7 386 30.1
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 2.5e-42 179.5 222 47.7
MBI03_g13045_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 7.1e-34 151.4 131 61.8
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 6.1e-33 148.3 237 33.8
Psat4g121040 Pisum sativum HOM05D001072 ORTHO05D006807 3.9e-32 145.6 96 66.7
Psat3g023200 Pisum sativum HOM05D001072 ORTHO05D006807 3.8e-19 102.4 77 61.0
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 3.2e-18 99.4 96 51.0
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 7.9e-17 94.7 184 32.6
TPR.G25341 Trifolium pratense HOM05D001072 ORTHO05D006807 2.3e-16 93.2 83 55.4
Lj2A1095G45 Lonicera japonica HOM05D001072 ORTHO05D006807 3.3e-15 89.4 127 45.7
Ah.09g228980 Amaranthus hybridus HOM05D001072 ORTHO05D006807 9.7e-15 87.8 108 52.8
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 2.6e-12 79.7 62 53.2
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 2.2e-11 76.6 62 51.6
RcHm_v2.0_Chr5g0061981 Rosa chinensis HOM05D001072 ORTHO05D006807 9.7e-07 61.2 183 23.5


User provided reference genes

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