Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb082600 Zea mays HOM05D005687 ORTHO05D045168 3.0e-54 214.9 108 100.0
Zm00001eb422680 Zea mays HOM05D005687 ORTHO05D007098 7.7e-26 120.6 86 74.4
Os04g0434300 Oryza sativa ssp. japonica HOM05D005687 ORTHO05D007098 1.9e-24 115.9 98 69.4
HanXRQChr02g0044211 Helianthus annuus HOM05D005687 ORTHO05D007098 3.4e-18 95.1 67 61.2
AT1G72090 Arabidopsis thaliana HOM05D005687 ORTHO05D007098 4.5e-18 94.7 63 71.4
Carub.0002s1887 Capsella rubella HOM05D005687 ORTHO05D007098 5.9e-18 94.4 63 71.4
Mapoly0002s0019 Marchantia polymorpha HOM05D005687 ORTHO05D007098 5.9e-18 94.4 49 81.6
RcHm_v2.0_Chr7g0228031 Rosa chinensis HOM05D005687 ORTHO05D007098 7.7e-18 94.0 91 51.6
Aa31LG4G8560 Aethionema arabicum HOM05D005687 ORTHO05D007098 1.0e-17 93.6 96 53.1
ATR1134G072 Amborella trichopoda HOM05D005687 ORTHO05D007098 1.0e-17 93.6 84 61.9
ECA247G3799 Erigeron canadensis HOM05D005687 ORTHO05D007098 1.0e-17 93.6 57 73.7
Thecc.08G189500 Theobroma cacao HOM05D005687 ORTHO05D007098 1.0e-17 93.6 93 53.8
Aqoxy5G02668 Aquilegia oxysepala HOM05D005687 ORTHO05D007098 1.3e-17 93.2 53 75.5
Gohir.D05G275400 Gossypium hirsutum HOM05D005687 ORTHO05D007098 1.7e-17 92.8 50 82.0
Prupe.1G553700 Prunus persica HOM05D005687 ORTHO05D007098 1.7e-17 92.8 53 75.5
MELO3C022220.2 Cucumis melo HOM05D005687 ORTHO05D007098 2.2e-17 92.4 63 66.7
FAN08G1133 Fragaria x ananassa HOM05D005687 ORTHO05D007098 2.2e-17 92.4 53 71.7
MD08G1219300 Malus domestica HOM05D005687 ORTHO05D007098 2.2e-17 92.4 53 73.6
CARHR064900 Cardamine hirsuta HOM05D005687 ORTHO05D007098 3.8e-17 91.7 101 53.5
FAN04G0407 Fragaria x ananassa HOM05D005687 ORTHO05D007098 3.8e-17 91.7 53 71.7
Potri.013G107800 Populus trichocarpa HOM05D005687 ORTHO05D007098 3.8e-17 91.7 91 49.5
Thhalv10018307m.g Eutrema salsugineum HOM05D005687 ORTHO05D007098 5.0e-17 91.3 101 53.5
Solyc11g022390.2 Solanum lycopersicum HOM05D005687 ORTHO05D007098 5.0e-17 91.3 50 76.0
Sopen11g011260 Solanum pennellii HOM05D005687 ORTHO05D007098 5.0e-17 91.3 50 76.0
PGSC0003DMG401009270 Solanum tuberosum HOM05D005687 ORTHO05D007098 5.0e-17 91.3 50 76.0
PSO017G1535 Papaver somniferum HOM05D005687 ORTHO05D007098 6.5e-17 90.9 50 76.0
PSO170G1542 Papaver somniferum HOM05D005687 ORTHO05D007098 6.5e-17 90.9 50 76.0
Peaxi162Scf00391g00732 Petunia axillaris HOM05D005687 ORTHO05D007098 6.5e-17 90.9 91 51.6
QL02p026060 Quercus lobata HOM05D005687 ORTHO05D007098 6.5e-17 90.9 85 56.5
unitig_32.g11184 Utricularia gibba HOM05D001035 ORTHO05D007098 6.5e-17 90.9 50 78.0
CANSAT35G0683 Cannabis sativa HOM05D005687 ORTHO05D007098 8.5e-17 90.5 89 55.1
Manes.18G104200 Manihot esculenta HOM05D005687 ORTHO05D007098 8.5e-17 90.5 93 52.7
VMungo1127G0635 Vigna mungo HOM05D005687 ORTHO05D007098 8.5e-17 90.5 49 77.6
CSS0035020 Camellia sinensis var. sinensis HOM05D005687 ORTHO05D007098 1.1e-16 90.1 50 78.0
Cc10_g10120 Coffea canephora HOM05D005687 ORTHO05D007098 1.1e-16 90.1 98 50.0
Glyma.12G001400 Glycine max HOM05D005687 ORTHO05D007098 1.1e-16 90.1 49 77.6
Gohir.A05G273000 Gossypium hirsutum HOM05D005687 ORTHO05D007098 1.1e-16 90.1 87 55.2
Gorai.009G288500 Gossypium raimondii HOM05D005687 ORTHO05D007098 1.1e-16 90.1 87 55.2
arahy.Tifrunner.gnm1.ann1.BDG91C Arachis hypogaea HOM05D005687 ORTHO05D007098 1.4e-16 89.7 49 77.6
Ca_19701_v3 Cicer arietinum L. HOM05D005687 ORTHO05D007098 1.4e-16 89.7 55 70.9
TAR376G0067 Trochodendron aralioides HOM05D005687 ORTHO05D007098 1.4e-16 89.7 92 52.2
PGR042G3796 Punica granatum HOM05D005687 ORTHO05D007098 1.9e-16 89.4 94 50.0
Dinv41744 Davidia involucrata HOM05D005687 ORTHO05D007098 2.5e-16 89.0 98 53.1
Medtr4g033210 Medicago truncatula HOM05D005687 ORTHO05D007098 2.5e-16 89.0 85 54.1
Atru.chr13.2348 Acer truncatum HOM05D005687 ORTHO05D007098 3.2e-16 88.6 128 44.5
AL2G31710 Arabidopsis lyrata HOM05D005687 ORTHO05D007098 3.2e-16 88.6 101 53.5
Migut.C01307 Erythranthe guttata HOM05D005687 ORTHO05D007098 3.2e-16 88.6 97 52.6
Sp5g27150 Schrenkiella parvula HOM05D005687 ORTHO05D007098 3.2e-16 88.6 101 52.5
TPR.G34137 Trifolium pratense HOM05D005687 ORTHO05D007098 3.2e-16 88.6 68 63.2
BcaC08g46660 Brassica carinata HOM05D005687 ORTHO05D007098 4.2e-16 88.2 102 51.0
DCAR_017367 Daucus carota HOM05D005687 ORTHO05D007098 4.2e-16 88.2 68 60.3
Phvul.011G001500 Phaseolus vulgaris HOM05D005687 ORTHO05D007098 4.2e-16 88.2 77 57.1
Pp3c6_10380 Physcomitrium patens HOM05D005687 ORTHO05D007098 4.2e-16 88.2 50 68.0
THA.LOC104800128 Tarenaya hassleriana HOM05D005687 ORTHO05D007098 4.2e-16 88.2 95 49.5
HPP92_016134 Vanilla planifolia HOM05D005687 ORTHO05D007098 4.2e-16 88.2 90 55.6
AUR62022645 Chenopodium quinoa HOM05D005687 ORTHO05D007098 5.5e-16 87.8 69 59.4
Lsat_1_v5_gn_1_12201 Lactuca sativa HOM05D005687 ORTHO05D007098 5.5e-16 87.8 94 54.3
FAN18G2804 Fragaria x ananassa HOM05D005687 ORTHO05D007098 7.2e-16 87.4 109 47.7
Lj3g0026050 Lotus japonicus HOM05D005687 ORTHO05D007098 7.2e-16 87.4 76 56.6
Nn5g27549 Nelumbo nucifera HOM05D005687 ORTHO05D007098 7.2e-16 87.4 95 48.4
Psat7g144520 Pisum sativum HOM05D005687 ORTHO05D007098 7.2e-16 87.4 77 57.1
MSTRG.1558 Avicennia marina HOM05D005687 ORTHO05D007098 9.4e-16 87.0 99 52.5
CAN.G155.2 Capsicum annuum HOM05D005687 ORTHO05D007098 9.4e-16 87.0 90 52.2
ClCG08G000280 Citrullus lanatus HOM05D005687 ORTHO05D007098 9.4e-16 87.0 100 53.0
FvH4_5g32030 Fragaria vesca HOM05D005687 ORTHO05D007098 9.4e-16 87.0 102 49.0
SalBow6G3036 Salvia bowleyana HOM05D005687 ORTHO05D007098 9.4e-16 87.0 87 55.2
TWI59G0019 Tripterygium wilfordii HOM05D005687 ORTHO05D007098 9.4e-16 87.0 97 47.4
Lalb_Chr19g0140501 Lupinus albus HOM05D005687 ORTHO05D007098 1.2e-15 86.7 52 67.3
CDE06G1536 Ceratophyllum demersum HOM05D005687 ORTHO05D007098 1.6e-15 86.3 68 60.3
Eucgr.F03000 Eucalyptus grandis HOM05D005687 ORTHO05D007098 2.1e-15 85.9 102 53.9
BcaB03g14944 Brassica carinata HOM05D005687 ORTHO05D007098 2.7e-15 85.5 101 51.5
MD15G1407900 Malus domestica HOM05D005687 ORTHO05D007098 2.7e-15 85.5 98 49.0
vmacro00992 Vaccinium macrocarpon HOM05D005687 ORTHO05D007098 2.7e-15 85.5 96 49.0
CsaV3_5G040460 Cucumis sativus L. HOM05D005687 ORTHO05D007098 3.6e-15 85.1 99 49.5
CSS0048983 Camellia sinensis var. sinensis HOM05D005687 ORTHO05D007098 6.1e-15 84.3 94 50.0
EL10Ac1g00122 Beta vulgaris HOM05D005687 ORTHO05D007098 8.0e-15 84.0 101 50.5
Hma1.2p1_0004F.1_g003990 Hydrangea macrophylla HOM05D005687 ORTHO05D007098 1.0e-14 83.6 45 82.2
Nitab4.5_0001534g0050 Nicotiana tabacum HOM05D005687 ORTHO05D007098 1.0e-14 83.6 104 48.1
Sc01g0001920 Simmondsia chinensis HOM05D005687 ORTHO05D007098 2.3e-14 82.4 98 49.0
Ciclev10000582m.g Citrus clementina HOM05D005687 ORTHO05D007098 3.0e-14 82.0 101 50.5
Actinidia01555 Actinidia chinensis HOM05D005687 ORTHO05D007098 5.2e-14 81.3 95 48.4
C06p46310 Brassica napus HOM05D005687 ORTHO05D007098 5.2e-14 81.3 112 46.4
Cpa.g.sc66.10 Carica papaya HOM05D005687 ORTHO05D007098 5.2e-14 81.3 110 45.5
A07p38240 Brassica napus HOM05D005687 ORTHO05D007098 1.1e-13 80.1 108 47.2
BolC6t39676H Brassica oleracea HOM05D005687 ORTHO05D007098 1.5e-13 79.7 112 46.4
BraA07t31389Z Brassica rapa HOM05D005687 ORTHO05D007098 1.5e-13 79.7 112 46.4
MCO07G120 Micromonas commoda HOM05D005687 ORTHO05D007098 5.7e-13 77.8 49 57.1
Cre03.g149300 Chlamydomonas reinhardtii HOM05D005687 ORTHO05D007098 1.7e-12 76.3 78 55.1
SMO116G0266 Selaginella moellendorffii HOM05D005687 ORTHO05D007098 2.8e-12 75.5 44 72.7
SGA_v2.0_scaffold118G32517 Striga asiatica HOM05D005687 ORTHO05D007098 1.4e-11 73.2 120 41.7
AUR62004616 Chenopodium quinoa HOM05D005687 ORTHO05D007098 1.0e-09 67.0 131 38.2
Cfa012938 Carpinus fangiana HOM05D005687 ORTHO05D007098 1.5e-08 63.2 85 47.1
PRCOL_00002733 Prasinoderma coloniale HOM05D005687 ORTHO05D007098 5.5e-08 61.2 55 45.5
Haze_21291 Corylus avellana HOM05D005687 ORTHO05D007098 1.2e-07 60.1 85 44.7
Sabra13G0093200 Salix brachista HOM05D005687 ORTHO05D007098 2.7e-07 58.9 88 40.9
arahy.Tifrunner.gnm1.ann1.H6WZRG Arachis hypogaea HOM05D005687 ORTHO05D007098 1.0e-06 57.0 32 75.0
Hund16781 Selenicereus undatus HOM05D005687 ORTHO05D007098 4.0e-06 55.1 55 50.9
Duzib116G0048 Durio zibethinus HOM05D005687 ORTHO05D045168 5.2e-06 54.7 32 75.0


User provided reference genes

Program Settings