Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 1.3e-296 1022.3 520 100.0
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 1.8e-237 825.9 500 81.6
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 2.1e-182 642.9 501 63.7
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 1.5e-180 636.7 501 62.9
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 1.5e-180 636.7 501 62.3
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 3.4e-180 635.6 503 62.6
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 1.3e-179 633.6 503 62.8
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 8.4e-179 630.9 501 61.9
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 1.4e-178 630.2 512 62.1
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 2.4e-178 629.4 501 63.3
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 3.2e-178 629.0 501 64.3
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 9.3e-178 627.5 501 62.7
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 1.6e-177 626.7 505 61.4
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 2.1e-177 626.3 501 62.7
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 6.0e-177 624.8 501 63.3
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 7.9e-177 624.4 501 61.9
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 1.0e-176 624.0 500 62.2
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 3.9e-176 622.1 501 62.3
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 8.7e-176 620.9 517 60.7
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 1.1e-175 620.5 502 62.0
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 4.3e-175 618.6 501 62.1
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 4.3e-175 618.6 501 62.1
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 4.3e-175 618.6 502 62.0
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 4.3e-175 618.6 511 60.3
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 5.6e-175 618.2 503 61.2
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 7.4e-175 617.8 501 61.7
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 1.6e-174 616.7 502 61.2
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 2.1e-174 616.3 500 61.4
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 4.8e-174 615.1 501 61.5
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 4.8e-174 615.1 510 61.2
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 1.4e-173 613.6 501 61.3
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 1.8e-173 613.2 501 61.5
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 1.8e-173 613.2 502 60.6
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 3.1e-173 612.5 500 61.4
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 3.1e-173 612.5 502 61.0
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 5.3e-173 611.7 501 61.5
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 1.2e-172 610.5 501 60.3
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 2.0e-172 609.8 502 60.2
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 2.6e-172 609.4 502 60.2
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 1.0e-171 607.4 500 61.8
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 2.2e-171 606.3 501 60.7
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 2.2e-171 606.3 501 60.1
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 2.9e-171 605.9 502 60.4
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 2.9e-171 605.9 502 60.4
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 2.9e-171 605.9 500 61.8
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 3.8e-171 605.5 503 60.0
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 1.4e-170 603.6 502 60.8
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 2.5e-170 602.8 494 60.5
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 5.5e-170 601.7 503 60.0
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 1.2e-169 600.5 504 59.9
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 2.7e-169 599.4 501 60.7
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 2.7e-169 599.4 502 60.4
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 4.6e-169 598.6 501 60.5
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 1.0e-168 597.4 501 61.3
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 1.0e-168 597.4 500 61.2
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 1.0e-168 597.4 501 59.3
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 1.8e-168 596.7 501 61.9
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 1.8e-168 596.7 501 60.1
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 1.8e-168 596.7 500 60.0
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 2.3e-168 596.3 501 59.5
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 3.0e-168 595.9 502 60.6
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 3.0e-168 595.9 501 60.1
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 3.0e-168 595.9 501 60.1
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 3.0e-168 595.9 501 61.3
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 3.9e-168 595.5 501 60.3
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 3.9e-168 595.5 513 60.2
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 5.1e-168 595.1 501 61.1
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 5.1e-168 595.1 501 60.3
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 5.1e-168 595.1 502 60.0
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 1.1e-167 594.0 502 60.2
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 1.5e-167 593.6 501 59.3
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 1.9e-167 593.2 505 59.0
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 1.9e-167 593.2 501 59.9
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 2.5e-167 592.8 501 59.9
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 4.3e-167 592.0 503 60.0
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 4.3e-167 592.0 500 60.4
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 2.1e-166 589.7 501 59.7
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 1.8e-165 586.6 501 59.9
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 4.1e-165 585.5 501 59.1
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 2.6e-164 582.8 511 58.7
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 3.4e-164 582.4 513 58.3
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 4.5e-164 582.0 493 59.4
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 5.8e-164 581.6 527 56.5
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 2.2e-163 579.7 501 58.7
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 2.1e-161 573.2 501 58.1
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 4.6e-161 572.0 506 57.7
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 6.1e-161 571.6 501 58.7
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 6.1e-161 571.6 501 57.1
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 7.4e-159 564.7 503 57.7
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 9.7e-159 564.3 553 54.2
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 3.7e-158 562.4 501 57.7
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 2.4e-157 559.7 518 55.2
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 5.3e-157 558.5 501 57.9
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 1.5e-156 557.0 483 59.4
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 2.0e-156 556.6 516 54.8
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 2.7e-153 546.2 541 53.6
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 2.8e-150 536.2 584 49.7
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 4.8e-150 535.4 461 58.8
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 1.1e-149 534.3 527 53.9
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 3.8e-147 525.8 504 55.6
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 1.3e-142 510.8 452 56.9
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 1.5e-140 503.8 501 52.5
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 9.4e-138 494.6 507 50.5
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 9.7e-135 484.6 505 53.7
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 1.1e-133 481.1 513 49.3
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 5.2e-128 462.2 409 57.7
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 3.7e-126 456.1 515 48.2
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 9.8e-119 431.4 394 57.1
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 1.0e-112 411.4 411 53.0
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 2.9e-110 403.3 509 41.5
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 3.3e-106 389.8 598 40.5
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 1.7e-99 367.5 354 55.1
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 1.3e-75 288.1 456 41.2
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 4.9e-70 269.6 387 43.7
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 7.6e-63 245.7 137 83.2
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 1.9e-45 188.0 146 65.1
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 5.5e-45 186.4 356 31.5
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 9.1e-32 142.5 278 29.9
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 3.6e-28 130.6 325 28.0
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 1.4e-16 92.0 53 79.2
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 5.0e-14 83.6 119 35.3
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 6.5e-14 83.2 42 83.3
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 4.1e-08 63.9 81 43.2
MBI19_g44872_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 5.0e-06 57.0 81 39.5


User provided reference genes

Program Settings