Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 3640.9 1864 100.0
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 3290.0 1864 89.9
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 3207.9 1858 87.9
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 3196.4 1881 87.4
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 3178.7 1864 87.2
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 3175.2 1871 87.3
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 3173.3 1858 87.7
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 3150.9 1859 87.3
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 3148.2 1866 86.1
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 3141.7 1880 86.4
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 3139.4 1864 85.6
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 3130.5 1858 86.9
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 3125.1 1857 86.8
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 3118.9 1857 86.6
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 3117.0 1865 85.4
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 3116.3 1871 86.3
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 2993.8 1857 84.0
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 2599.3 1864 71.6
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 0.0e+00 2580.4 1654 79.3
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 1989.2 1920 54.4
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1976.1 1917 53.9
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 1963.7 1909 54.5
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 1949.9 1915 53.8
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 1940.2 1921 53.4
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 1936.8 1909 53.9
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 1936.4 1922 53.5
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 1934.8 1901 54.8
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 1934.1 1960 52.3
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1928.7 1904 53.0
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1915.2 1905 53.0
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 1903.6 1920 52.3
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1901.7 1919 53.5
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 1899.8 1915 52.8
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 1888.6 1920 52.3
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 1887.5 1919 52.7
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 1884.8 1911 53.3
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 1876.7 1920 52.4
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 1868.6 1913 52.2
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1867.0 1914 51.9
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1864.0 1917 52.4
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1850.1 1942 51.7
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 1849.3 1903 51.6
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 1848.9 1905 52.2
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 1825.4 1917 51.5
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1823.5 1905 51.3
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 1817.7 1916 51.3
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 1815.8 1908 51.5
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 1814.3 1912 51.6
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1813.5 1916 51.1
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1813.1 1907 51.5
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1804.6 1908 51.4
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 1804.3 1892 52.0
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 1801.9 1905 50.9
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1800.8 1953 50.4
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 1798.9 1917 50.5
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 1796.6 1956 49.8
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 1787.7 1914 50.8
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 1783.5 1923 50.8
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 1768.4 1907 50.2
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 1759.6 1914 49.8
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 1755.7 1918 49.7
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 1735.7 2030 48.1
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 1725.3 1917 48.7
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 1718.7 1914 48.9
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 1718.7 1912 49.7
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1718.4 1918 49.6
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1714.5 1940 48.4
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 1706.0 1917 48.6
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 1692.6 1891 48.7
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1676.0 1940 47.8
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1675.2 2090 46.4
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 1673.7 1907 47.9
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1662.5 1925 47.8
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1653.6 1927 47.8
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1652.5 1879 48.6
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1652.1 1902 47.7
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 1650.2 1932 47.1
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1645.6 1901 47.6
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1637.5 1901 47.4
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1622.1 2413 40.9
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1621.7 1855 47.9
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 1619.8 1763 49.0
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 1615.9 1934 46.7
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 1588.2 1955 45.1
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 1588.2 1919 47.5
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 1586.6 1848 48.3
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1584.3 1918 46.1
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1575.1 1908 46.9
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 1530.8 1824 47.5
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1521.5 1924 45.9
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1517.7 1966 43.7
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 1503.4 1841 45.6
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1469.1 1817 45.3
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 0.0e+00 1418.3 1926 42.5
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 0.0e+00 1344.3 1924 40.9
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 0.0e+00 1342.8 1955 41.4
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 0.0e+00 1285.4 1572 46.4
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1277.3 1322 51.4
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 0.0e+00 1212.2 1927 38.3
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1180.2 1199 52.6
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 1.8e-295 1020.4 2060 33.2
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 4.8e-293 1012.3 2046 33.8
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 2.0e-291 1006.9 889 57.9
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 1.2e-288 997.7 1098 50.4
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 1.2e-262 911.4 1965 32.3
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 1.5e-262 911.0 1139 45.7
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 5.9e-251 872.5 1896 33.0
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 2.1e-235 820.8 1685 33.2
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 1.4e-228 798.1 1104 41.2
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 1.0e-202 712.2 776 50.4
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 2.3e-178 631.3 905 40.3
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 3.9e-133 481.1 699 41.1
Dinv12246 Davidia involucrata HOM05D001072 ORTHO05D006807 2.7e-70 272.3 262 50.8
Dinv12247 Davidia involucrata HOM05D001072 ORTHO05D006807 6.1e-70 271.2 184 75.0
Psat0s2465g0160 Pisum sativum HOM05D001072 ORTHO05D006807 2.1e-62 246.1 166 72.9
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 2.7e-62 245.7 563 30.2
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 6.3e-51 208.0 297 46.8
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 3.8e-48 198.7 254 39.8
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-46 193.0 653 27.3
MBI03_g13045_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 4.0e-45 188.7 139 68.3
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 7.5e-44 184.5 206 42.7
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 1.0e-37 164.1 360 30.8
Psat4g121040 Pisum sativum HOM05D001072 ORTHO05D006807 4.5e-33 148.7 103 65.0
Lj2A1095G45 Lonicera japonica HOM05D001072 ORTHO05D006807 4.5e-25 122.1 127 53.5
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 1.7e-24 120.2 207 28.5
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 2.3e-21 109.8 95 54.7
Psat3g023200 Pisum sativum HOM05D001072 ORTHO05D006807 2.3e-21 109.8 82 62.2
Ah.09g228980 Amaranthus hybridus HOM05D001072 ORTHO05D006807 4.0e-21 109.0 105 57.1
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 4.0e-21 109.0 164 39.6
TPR.G25341 Trifolium pratense HOM05D001072 ORTHO05D006807 1.6e-17 97.1 82 61.0
RcHm_v2.0_Chr5g0061981 Rosa chinensis HOM05D001072 ORTHO05D006807 1.8e-13 83.6 197 29.4
Cpa.g.sc2.314 Carica papaya HOM05D001072 ORTHO05D006807 6.4e-11 75.1 128 34.4
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 1.1e-10 74.3 60 50.0
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 9.2e-10 71.2 60 48.3
Psat0s3437g0080 Pisum sativum HOM05D001072 ORTHO05D006807 7.8e-09 68.2 90 40.0
Ca_27012_v3 Cicer arietinum L. HOM05D000103 ORTHO05D006807 5.6e-07 62.0 179 25.7


User provided reference genes

Program Settings