Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 0.0e+00 1111.3 573 100.0
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 9.3e-272 939.9 634 78.7
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 7.7e-258 893.6 634 74.1
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 1.1e-256 889.8 631 75.3
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 1.4e-256 889.4 632 75.0
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 5.5e-256 887.5 635 74.8
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 2.7e-255 885.2 640 72.8
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 1.0e-254 883.2 631 74.5
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 2.3e-254 882.1 631 74.6
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 5.1e-254 880.9 631 74.3
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 1.3e-249 866.3 634 71.6
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 1.4e-248 862.8 623 73.2
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 4.3e-208 728.4 634 61.7
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 5.1e-193 678.3 641 55.7
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 1.1e-192 677.2 637 54.6
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 1.2e-191 673.7 643 56.0
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 7.6e-189 664.5 652 53.1
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 9.9e-189 664.1 649 54.4
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 1.3e-188 663.7 650 54.6
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.3e-188 663.7 649 53.9
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 2.2e-188 662.9 647 54.3
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 4.6e-186 655.2 663 52.8
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 1.7e-185 653.3 671 52.6
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 1.1e-184 650.6 653 53.3
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 1.9e-184 649.8 628 52.9
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 4.3e-184 648.7 649 52.7
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 5.6e-184 648.3 669 52.6
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 1.2e-183 647.1 650 53.1
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 2.8e-183 646.0 649 51.9
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 3.6e-183 645.6 726 49.0
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 6.2e-183 644.8 650 52.3
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 6.2e-183 644.8 634 53.6
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 8.1e-183 644.4 650 52.5
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.1e-182 644.0 531 67.2
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 1.1e-182 644.0 651 52.2
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 4.0e-182 642.1 649 51.9
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 9.0e-182 641.0 632 53.3
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 1.5e-181 640.2 650 52.3
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 2.6e-181 639.4 633 53.9
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.6e-181 639.4 649 51.8
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 4.4e-181 638.6 651 52.5
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 5.8e-181 638.3 649 51.6
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 7.6e-181 637.9 669 51.3
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 1.3e-180 637.1 648 51.2
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 1.7e-180 636.7 651 52.1
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 2.2e-180 636.3 654 51.4
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.9e-180 636.0 649 51.6
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.8e-180 635.6 647 52.4
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 4.9e-180 635.2 656 51.1
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 8.4e-180 634.4 649 51.2
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 1.9e-179 633.3 673 51.3
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 2.4e-179 632.9 648 51.7
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 3.2e-179 632.5 647 52.6
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 4.2e-179 632.1 643 52.4
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 4.2e-179 632.1 650 52.3
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.2e-178 630.6 656 50.9
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 2.7e-178 629.4 648 50.9
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 6.0e-178 628.2 632 52.7
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 6.0e-178 628.2 668 50.6
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 7.8e-178 627.9 662 51.5
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 2.3e-177 626.3 666 50.9
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 3.0e-177 625.9 655 50.7
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 6.6e-177 624.8 652 50.8
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.5e-176 623.6 670 51.9
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 1.5e-176 623.6 647 51.9
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 1.5e-176 623.6 672 51.0
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 1.9e-176 623.2 651 50.7
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 3.3e-176 622.5 669 51.3
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 5.6e-176 621.7 652 50.6
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 2.1e-175 619.8 645 51.2
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 2.8e-175 619.4 671 50.4
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 4.8e-175 618.6 653 50.5
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 6.2e-175 618.2 668 50.1
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 6.2e-175 618.2 668 50.1
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.8e-174 616.7 668 50.1
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 5.3e-174 615.1 668 50.0
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 1.2e-173 614.0 645 51.8
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.2e-173 614.0 647 49.9
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 3.4e-173 612.5 664 48.5
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 1.9e-171 606.7 624 51.3
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 7.1e-171 604.7 648 51.9
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 6.0e-170 601.7 624 51.1
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 6.0e-170 601.7 649 50.4
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.0e-169 600.9 630 52.7
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 1.3e-169 600.5 663 48.9
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 9.6e-168 594.3 645 48.8
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 1.4e-166 590.5 634 49.4
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 2.4e-166 589.7 646 50.2
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.0e-165 586.6 600 52.0
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 3.4e-165 585.9 650 50.3
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 2.9e-164 582.8 634 49.5
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 4.2e-163 578.9 677 48.4
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 3.4e-157 559.3 615 49.6
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 1.2e-154 550.8 636 47.8
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 4.6e-154 548.9 640 47.7
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.3e-153 546.6 574 50.7
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 5.7e-152 542.0 621 47.5
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 4.1e-150 535.8 679 45.4
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 2.6e-149 533.1 541 51.4
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 1.8e-142 510.4 564 50.4
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 9.1e-142 508.1 579 48.9
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 3.9e-137 492.7 614 45.9
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 2.6e-136 490.0 617 44.6
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 2.5e-131 473.4 631 43.1
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 7.2e-131 471.9 585 47.9
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 6.1e-130 468.8 485 51.1
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 1.4e-118 431.0 514 46.3
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 4.1e-118 429.5 458 48.3
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 2.1e-114 417.2 645 38.6
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 1.4e-113 414.5 633 39.2
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 3.0e-113 413.3 537 45.8
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 1.2e-112 411.4 644 35.9
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 1.6e-109 401.0 563 41.4
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 3.3e-107 393.3 459 46.0
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 4.9e-103 379.4 346 57.8
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 1.5e-96 357.8 381 48.3
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 5.2e-89 332.8 644 32.9
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 3.5e-77 293.5 484 35.7
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 5.6e-75 286.2 256 59.0
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 9.0e-57 225.7 211 52.6
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 6.4e-55 219.5 262 47.7
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 8.7e-44 182.6 136 62.5
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 1.7e-39 168.3 339 35.7
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 3.9e-36 157.1 126 60.3
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.9e-35 154.8 353 36.8
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 3.3e-35 154.1 116 62.9
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 1.3e-34 152.1 105 69.5
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 2.2e-34 151.4 94 77.7
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 6.9e-33 146.4 93 71.0
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 6.5e-31 139.8 133 49.6
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 2.5e-30 137.9 192 43.8
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 1.0e-28 132.5 88 69.3
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 1.8e-28 131.7 97 60.8
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 8.8e-28 129.4 96 60.4
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.4e-25 121.3 82 69.5
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 1.0e-23 115.9 170 40.6
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.7e-23 115.2 200 37.0
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 7.9e-21 106.3 72 70.8
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 1.4e-20 105.5 96 49.0
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 3.1e-17 94.4 81 54.3
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 9.1e-17 92.8 77 61.0
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 9.1e-17 92.8 81 53.1
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 1.0e-12 79.3 273 26.0
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 2.0e-11 75.1 48 66.7
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 3.3e-11 74.3 55 58.2
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 4.4e-11 73.9 55 61.8
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 7.4e-11 73.2 132 36.4
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 2.8e-10 71.2 55 60.0
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 4.1e-09 67.4 53 58.5
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 1.2e-08 65.9 46 71.7
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 2.0e-08 65.1 53 56.6
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 1.1e-06 59.3 60 58.3


User provided reference genes

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