Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 4.7e-140 501.1 241 100.0
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 1.5e-117 426.4 238 85.3
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 2.3e-115 419.1 238 84.9
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 8.8e-115 417.2 235 85.5
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 7.5e-114 414.1 235 85.1
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 6.3e-113 411.0 235 84.3
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 4.6e-103 378.3 239 74.1
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 4.3e-101 371.7 238 72.3
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 4.7e-100 368.2 236 72.9
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 4.7e-100 368.2 238 72.7
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 9.8e-98 360.5 234 71.4
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 4.9e-97 358.2 238 69.7
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 7.0e-96 354.4 237 70.0
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 9.2e-96 354.0 238 68.5
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 9.2e-96 354.0 236 72.0
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.2e-95 353.6 238 69.7
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.0e-95 352.8 237 70.0
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 6.0e-95 351.3 235 71.1
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 1.0e-94 350.5 236 71.2
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 8.6e-94 347.4 237 69.6
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.1e-93 347.1 238 68.1
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 4.3e-93 345.1 236 65.7
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.6e-92 342.0 238 68.1
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 8.1e-92 340.9 239 68.2
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 8.1e-92 340.9 237 68.8
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 8.1e-92 340.9 234 67.9
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 3.1e-91 339.0 238 66.8
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 5.2e-91 338.2 240 67.1
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 1.2e-90 337.0 235 67.7
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 3.4e-90 335.5 239 66.5
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 1.7e-89 333.2 238 65.5
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 2.2e-89 332.8 239 66.5
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 2.2e-89 332.8 239 66.1
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 2.9e-89 332.4 238 65.5
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 8.3e-89 330.9 237 65.8
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.1e-88 330.5 239 69.0
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 1.4e-88 330.1 239 65.7
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.4e-88 330.1 239 68.6
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 3.2e-88 328.9 237 65.8
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 7.1e-88 327.8 233 66.1
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 9.2e-88 327.4 238 63.4
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.2e-87 327.0 238 66.8
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 4.6e-87 325.1 233 65.2
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 7.8e-87 324.3 238 64.3
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 3.0e-86 322.4 236 65.3
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 3.0e-86 322.4 236 65.3
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 6.6e-86 321.2 239 63.6
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 1.1e-85 320.5 243 65.8
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 1.1e-85 320.5 233 65.7
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.9e-85 319.7 233 65.2
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 2.5e-85 319.3 233 64.8
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 9.5e-85 317.4 238 63.0
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.6e-84 316.6 238 63.4
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.1e-84 316.2 238 62.2
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.1e-84 316.2 236 64.0
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 3.6e-84 315.5 237 62.9
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 4.7e-84 315.1 238 62.2
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 6.2e-84 314.7 238 62.6
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 8.1e-84 314.3 236 62.3
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 1.1e-83 313.9 238 63.9
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.1e-83 313.9 238 61.3
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 1.1e-83 313.9 235 63.4
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.4e-83 313.5 241 60.2
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 1.4e-83 313.5 239 63.2
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 8.9e-83 310.8 241 59.3
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 8.9e-83 310.8 238 61.8
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 2.0e-82 309.7 238 62.6
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 2.6e-82 309.3 236 61.4
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 7.6e-82 307.8 241 64.3
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 9.9e-82 307.4 235 62.1
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 1.7e-81 306.6 241 64.3
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.1e-80 303.9 240 64.6
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 4.1e-80 302.0 238 60.1
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 5.4e-80 301.6 237 64.6
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 7.1e-80 301.2 242 62.4
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 7.1e-80 301.2 242 62.4
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 9.2e-80 300.8 246 62.6
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 1.6e-79 300.1 241 62.7
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 2.1e-79 299.7 236 58.1
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 2.7e-79 299.3 246 62.2
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 4.6e-79 298.5 241 61.4
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 6.0e-79 298.1 241 62.7
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 7.8e-79 297.7 234 61.5
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 1.0e-78 297.4 252 61.1
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 2.3e-78 296.2 243 62.1
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 5.1e-78 295.0 249 61.0
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 5.1e-78 295.0 216 66.2
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 6.6e-78 294.7 235 61.3
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 8.6e-78 294.3 216 64.4
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.5e-77 293.5 237 59.9
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 1.9e-77 293.1 241 58.9
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 4.3e-77 292.0 242 60.7
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.2e-76 290.4 240 56.7
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.2e-76 290.4 240 56.7
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 2.1e-76 289.7 234 59.0
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 2.1e-76 289.7 239 56.1
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 2.8e-76 289.3 228 59.2
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 3.6e-76 288.9 240 62.1
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 3.6e-76 288.9 244 59.4
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.6e-76 288.9 244 59.4
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.4e-75 287.0 234 58.5
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 1.8e-75 286.6 248 57.3
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.5e-74 283.5 240 54.6
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 5.8e-74 281.6 237 57.8
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 5.8e-74 281.6 240 59.2
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 5.8e-74 281.6 240 59.6
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 9.9e-74 280.8 237 59.5
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.9e-73 279.3 238 59.2
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 3.8e-73 278.9 237 58.2
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 6.4e-73 278.1 238 58.0
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 6.4e-73 278.1 204 66.2
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 8.4e-73 277.7 237 58.2
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 8.4e-73 277.7 237 58.6
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.4e-72 276.9 241 58.1
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.4e-72 276.9 205 62.0
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 3.2e-72 275.8 237 58.2
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 5.4e-72 275.0 240 54.6
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 9.3e-72 274.2 236 58.5
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 9.3e-72 274.2 236 58.5
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 1.2e-71 273.9 234 56.8
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.6e-71 273.5 237 58.2
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 1.6e-71 273.5 234 59.4
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.1e-71 273.1 237 57.8
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.0e-70 270.8 241 56.0
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 1.3e-70 270.4 242 55.8
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 1.7e-70 270.0 237 57.4
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 1.7e-70 270.0 237 57.4
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 6.6e-70 268.1 237 57.8
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 8.7e-70 267.7 239 53.1
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 1.1e-69 267.3 232 56.5
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.5e-69 266.9 237 55.3
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.9e-69 266.5 205 61.0
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 1.9e-69 266.5 236 59.3
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 2.5e-69 266.2 234 55.6
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 7.3e-69 264.6 224 59.8
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 9.6e-69 264.2 238 57.6
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 9.6e-69 264.2 216 57.9
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 2.9e-65 252.7 224 55.8
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 3.8e-65 252.3 231 52.8
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.9e-64 250.0 241 53.9
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 1.6e-63 246.9 239 52.3
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 2.7e-63 246.1 234 54.3
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 6.0e-63 245.0 257 51.8
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 6.0e-63 245.0 170 67.1
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 1.1e-61 240.7 209 56.9
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 1.1e-61 240.7 190 60.0
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.5e-61 240.4 231 52.4
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 2.1e-60 236.5 223 52.5
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 4.8e-60 235.3 233 52.8
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 3.2e-56 222.6 157 67.5
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 7.1e-56 221.5 241 48.5
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 2.1e-55 219.9 237 48.1
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.3e-54 217.2 163 62.0
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 8.7e-54 214.5 185 61.1
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 5.3e-51 205.3 240 47.5
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 1.5e-50 203.8 163 57.7
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.0e-50 203.4 158 60.8
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.4e-50 202.6 241 46.1
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 5.5e-48 195.3 261 41.0
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 5.1e-46 188.7 259 39.8
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.8e-44 182.2 200 52.0
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 9.0e-43 177.9 207 48.3
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 7.2e-40 168.3 129 63.6
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 3.0e-38 162.9 101 76.2
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.3e-37 159.1 191 42.9
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 2.4e-35 153.3 116 65.5
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 5.5e-32 142.1 148 50.7
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 9.4e-32 141.4 93 73.1
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 2.1e-31 140.2 120 60.8
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 1.8e-30 137.1 135 52.6
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.9e-30 136.0 107 57.9
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 1.5e-29 134.0 118 56.8
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 2.1e-23 113.6 168 39.9
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 3.3e-21 106.3 132 45.5
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 1.4e-19 100.9 101 48.5
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 3.1e-19 99.8 71 67.6
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 4.1e-19 99.4 89 55.1
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 3.5e-18 96.3 267 28.1
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.9e-16 90.5 96 45.8
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 2.5e-16 90.1 191 29.3
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 7.2e-16 88.6 80 53.8
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 2.4e-11 73.6 47 70.2
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 5.3e-11 72.4 267 24.7
Cfa023727 Carpinus fangiana HOM05D003786 ORTHO05D004375 2.7e-10 70.1 242 25.2


User provided reference genes

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