Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1660.2 865 100.0
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1484.5 866 89.5
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1483.8 866 89.3
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1477.2 866 89.0
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1421.8 864 81.0
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1412.5 860 80.0
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1411.0 861 81.9
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1407.5 860 79.5
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1407.5 860 79.5
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1407.1 864 79.2
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1406.0 865 83.4
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1404.4 858 84.4
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1396.7 860 84.0
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1394.8 864 83.0
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1388.6 884 81.4
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1380.2 862 80.3
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 0.0e+00 1373.2 859 81.3
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1371.7 860 80.1
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1370.5 866 78.9
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1369.0 865 78.7
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1362.4 866 76.2
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1352.4 863 76.7
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1350.5 866 75.4
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1345.5 861 75.8
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1343.2 873 77.1
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1340.9 867 79.6
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1340.9 860 76.7
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1340.5 884 74.0
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1334.7 864 76.6
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1327.8 865 77.1
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1327.8 866 74.5
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1326.6 900 72.6
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1318.1 862 77.4
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1315.4 865 76.0
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1313.9 860 74.5
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1313.1 864 75.0
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1312.4 867 76.0
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1310.0 862 77.8
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1309.7 860 74.4
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1308.5 830 78.9
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1307.0 866 73.9
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1305.0 862 77.8
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1304.7 864 78.1
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1303.9 859 73.8
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1303.1 861 74.1
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1301.6 859 73.3
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1298.9 864 74.2
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1297.7 861 76.9
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1296.6 866 75.3
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1295.4 864 77.5
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1290.8 863 74.0
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1288.1 864 74.0
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1280.0 864 76.7
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1279.6 864 76.9
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1279.6 875 75.7
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1276.2 842 76.0
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1260.4 929 69.8
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1254.6 864 72.5
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1250.7 864 72.3
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1248.8 922 71.8
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1242.3 863 71.7
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 0.0e+00 1238.4 864 74.2
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1231.9 866 69.6
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1229.2 866 69.4
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1227.6 868 70.2
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1227.6 857 70.7
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 0.0e+00 1226.5 858 69.7
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1224.2 860 69.3
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1222.6 863 71.4
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1220.3 858 69.3
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1219.5 858 72.3
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1218.0 1010 63.6
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 0.0e+00 1216.4 858 69.0
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1216.1 874 70.4
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 0.0e+00 1215.7 858 69.5
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 0.0e+00 1215.3 858 69.3
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1213.7 858 69.1
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1210.7 858 68.9
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 0.0e+00 1209.1 858 68.8
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1207.6 858 68.8
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 0.0e+00 1207.6 858 69.1
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1200.7 863 70.3
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 0.0e+00 1198.7 750 83.3
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 0.0e+00 1192.6 905 65.6
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 0.0e+00 1189.1 951 65.5
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 0.0e+00 1184.9 868 67.4
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 0.0e+00 1180.2 858 67.6
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1176.8 895 68.9
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 0.0e+00 1173.7 861 70.0
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 0.0e+00 1171.0 942 68.9
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1156.0 784 75.1
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 0.0e+00 1152.5 873 65.4
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 0.0e+00 1118.2 866 64.0
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 0.0e+00 1092.0 891 63.6
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 3.4e-310 1068.1 695 75.8
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 4.2e-308 1061.2 789 71.7
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 2.2e-293 1012.3 648 76.2
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 1.2e-275 953.4 624 79.0
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 8.3e-272 940.6 881 53.1
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 2.3e-266 922.5 873 52.9
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 9.1e-263 910.6 874 53.5
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 1.1e-228 797.3 869 46.1
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 2.4e-226 789.6 877 52.3
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 3.1e-210 736.1 560 65.4
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 1.2e-209 734.2 494 73.5
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 2.2e-208 729.9 584 65.6
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 6.5e-200 701.8 954 42.5
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 3.2e-191 672.9 487 70.8
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 6.5e-184 648.7 845 45.2
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 7.2e-183 645.2 381 80.1
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 1.3e-179 634.4 480 63.1
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 1.1e-172 611.3 503 60.0
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 1.6e-166 590.9 445 67.0
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 7.0e-154 548.9 327 82.0
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 1.4e-130 471.5 613 45.4
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.1e-121 441.0 377 59.2
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 5.3e-93 346.7 235 71.1
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 6.5e-83 313.2 162 88.9
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 1.3e-80 305.4 396 46.7
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 1.1e-79 302.4 614 32.7
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 1.1e-61 242.7 647 28.3
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 3.8e-51 207.6 156 67.3
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 1.3e-38 166.0 536 26.7
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.5e-36 157.9 128 60.2
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 8.5e-35 153.3 155 51.0
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 5.5e-34 150.6 127 59.1
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 7.2e-34 150.2 97 71.1
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 6.1e-33 147.1 652 22.2
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 6.1e-33 147.1 120 60.8
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 1.5e-26 125.9 115 55.7
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.7e-19 102.4 129 43.4
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 1.9e-18 99.0 91 52.7
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 1.4e-16 92.8 42 92.9
MBI19_g44872_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 2.5e-10 72.0 85 47.1
QL10p024418 Quercus lobata HOM05D005600 ORTHO05D006682 2.8e-09 68.6 41 73.2
Sabra16G0154900 Salix brachista HOM05D005600 ORTHO05D349220 2.6e-07 62.0 42 61.9
COL.COLO4_36488 Corchorus olitorius HOM05D005600 ORTHO05D006682 2.2e-06 58.9 28 96.4
Hund17892 Selenicereus undatus HOM05D026955 ORTHO05D006682 2.9e-06 58.5 28 89.3


User provided reference genes

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