Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 1.5e-92 343.6 292 100.0
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 3.8e-88 328.9 292 75.7
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 6.5e-88 328.2 292 77.4
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.2e-84 317.4 287 76.0
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 4.9e-83 312.0 292 83.2
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 5.0e-80 302.0 287 72.1
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 2.0e-76 290.0 290 69.7
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 2.5e-71 273.1 239 69.5
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 5.6e-71 271.9 239 76.2
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 2.7e-65 253.1 149 88.6
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 7.8e-65 251.5 239 72.8
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 7.8e-65 251.5 293 68.3
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 1.0e-64 251.1 149 87.2
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.7e-64 250.4 287 74.2
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 2.3e-64 250.0 240 70.4
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 2.3e-64 250.0 293 67.2
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 6.6e-64 248.4 149 87.2
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 6.6e-64 248.4 149 87.2
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 6.6e-64 248.4 291 68.4
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 8.6e-64 248.1 149 86.6
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.1e-63 247.7 239 69.5
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 1.9e-63 246.9 149 86.6
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 1.9e-63 246.9 149 86.6
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 1.9e-63 246.9 149 86.6
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 1.9e-63 246.9 149 86.6
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.9e-63 246.9 149 88.6
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 2.5e-63 246.5 149 84.6
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 4.3e-63 245.7 149 85.9
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 4.3e-63 245.7 149 85.9
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 4.3e-63 245.7 149 85.9
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 5.6e-63 245.4 292 72.9
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 5.6e-63 245.4 297 81.5
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 7.3e-63 245.0 149 89.3
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 7.3e-63 245.0 288 69.8
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 1.2e-62 244.2 291 72.9
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 1.6e-62 243.8 150 86.0
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 1.6e-62 243.8 239 71.1
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 2.1e-62 243.4 149 85.2
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 2.1e-62 243.4 149 85.2
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 2.1e-62 243.4 149 85.2
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 2.8e-62 243.0 297 65.3
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 3.6e-62 242.7 149 83.2
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 3.6e-62 242.7 149 85.2
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 4.7e-62 242.3 292 63.7
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 6.2e-62 241.9 149 83.9
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 6.2e-62 241.9 149 83.9
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 6.2e-62 241.9 149 84.6
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 6.2e-62 241.9 149 84.6
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 8.1e-62 241.5 149 84.6
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 8.1e-62 241.5 149 84.6
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 8.1e-62 241.5 149 85.2
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 8.1e-62 241.5 293 66.9
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 1.1e-61 241.1 149 83.9
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 1.1e-61 241.1 149 83.9
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 1.1e-61 241.1 148 85.1
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.4e-61 240.7 149 83.2
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 1.4e-61 240.7 292 68.5
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.8e-61 240.4 149 83.9
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 1.8e-61 240.4 149 83.9
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 1.8e-61 240.4 299 60.2
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 1.8e-61 240.4 152 82.9
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 2.3e-61 240.0 295 61.7
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 2.3e-61 240.0 149 83.2
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 3.1e-61 239.6 149 83.2
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 4.0e-61 239.2 149 83.9
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 4.0e-61 239.2 149 90.6
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 5.2e-61 238.8 149 83.2
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 5.2e-61 238.8 149 82.6
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 6.8e-61 238.4 149 84.6
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 8.9e-61 238.0 149 83.2
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 8.9e-61 238.0 149 83.2
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 1.2e-60 237.7 149 82.6
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.2e-60 237.7 149 84.6
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 1.2e-60 237.7 149 83.9
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 1.2e-60 237.7 149 83.2
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 1.5e-60 237.3 149 82.6
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 1.5e-60 237.3 149 83.2
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 1.5e-60 237.3 295 71.5
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 2.0e-60 236.9 228 75.4
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 2.0e-60 236.9 149 81.9
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 3.4e-60 236.1 149 82.6
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 3.4e-60 236.1 149 83.2
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 4.4e-60 235.7 291 65.6
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 5.8e-60 235.3 253 65.6
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 7.5e-60 235.0 287 67.9
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 7.5e-60 235.0 287 67.9
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 7.5e-60 235.0 149 82.6
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 7.5e-60 235.0 307 65.8
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 9.8e-60 234.6 150 84.0
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 9.8e-60 234.6 149 81.9
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 1.3e-59 234.2 150 88.7
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 1.3e-59 234.2 149 87.9
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.3e-59 234.2 147 82.3
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 1.3e-59 234.2 149 81.2
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 1.3e-59 234.2 243 58.8
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 1.7e-59 233.8 149 81.9
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.7e-59 233.8 151 80.8
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 1.7e-59 233.8 151 80.8
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.7e-59 233.8 151 80.8
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 2.2e-59 233.4 149 81.9
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 2.9e-59 233.0 150 82.0
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 3.7e-59 232.6 143 83.9
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 3.7e-59 232.6 150 83.3
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 3.7e-59 232.6 290 62.8
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 3.7e-59 232.6 149 79.9
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 4.9e-59 232.3 149 79.2
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 6.4e-59 231.9 151 80.8
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 6.4e-59 231.9 151 80.8
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 6.4e-59 231.9 149 81.2
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 8.3e-59 231.5 301 62.8
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.4e-58 230.7 149 81.2
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.9e-58 230.3 151 78.8
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 1.9e-58 230.3 290 62.4
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 4.1e-58 229.2 149 80.5
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 9.2e-58 228.0 149 79.9
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 1.2e-57 227.6 149 81.2
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.2e-57 227.6 149 81.2
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.2e-57 227.6 149 81.9
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.6e-57 227.3 149 80.5
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 3.5e-57 226.1 149 79.9
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.5e-57 226.1 149 80.5
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.5e-57 226.1 149 80.5
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 7.8e-57 224.9 150 78.7
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 7.8e-57 224.9 291 63.9
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 3.0e-56 223.0 294 71.4
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 3.9e-56 222.6 142 81.7
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.5e-55 220.7 292 57.2
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 1.5e-55 220.7 149 84.6
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.5e-55 219.9 145 79.3
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 2.5e-55 219.9 133 88.0
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 2.8e-54 216.5 145 77.9
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 8.9e-53 211.5 150 82.0
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 6.4e-51 205.3 150 73.3
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 1.4e-50 204.1 139 77.0
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 2.5e-47 193.4 149 68.5
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 9.6e-47 191.4 153 76.5
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 2.8e-46 189.9 124 82.3
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 3.1e-45 186.4 292 56.8
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 3.1e-45 186.4 292 56.8
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 1.7e-43 180.6 119 82.4
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 1.7e-43 180.6 150 63.3
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 3.2e-42 176.4 118 78.0
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 7.1e-42 175.3 216 52.8
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 3.9e-40 169.5 149 66.4
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 8.7e-40 168.3 149 68.5
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 1.6e-38 164.1 111 77.5
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 2.1e-38 163.7 149 60.4
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 6.2e-38 162.2 127 68.5
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 1.5e-36 157.5 149 61.1
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 3.8e-35 152.9 91 82.4
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 1.1e-31 141.4 90 81.1
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.6e-30 137.5 149 60.4
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.6e-30 137.5 149 60.4
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.6e-30 137.5 149 60.4
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 8.1e-30 135.2 96 74.0
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.8e-29 134.0 149 59.7
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 1.1e-26 124.8 141 51.1
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.5e-20 104.4 144 49.3
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 2.5e-18 97.1 53 86.8
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 3.1e-13 80.1 40 97.5
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.2e-12 78.2 50 76.0
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 4.5e-12 76.3 38 94.7
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 7.6e-12 75.5 39 89.7


User provided reference genes

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