Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G203700 Theobroma cacao HOM05D006570 ORTHO05D008193 5.6e-259 897.1 462 100.0
Duzib133G0843 Durio zibethinus HOM05D006570 ORTHO05D008193 7.4e-219 763.8 461 86.1
Gohir.D07G093500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 1.3e-207 726.5 455 82.4
Gorai.001G100200 Gossypium raimondii HOM05D006570 ORTHO05D008193 1.3e-207 726.5 455 82.4
Gohir.A07G088500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 1.7e-202 709.5 455 81.1
COL.COLO4_19720 Corchorus olitorius HOM05D006570 ORTHO05D008193 4.8e-194 681.4 425 82.6
Atru.chr6.3468 Acer truncatum HOM05D006570 ORTHO05D008193 2.9e-175 619.0 453 70.6
Potri.014G198000 Populus trichocarpa HOM05D006570 ORTHO05D008193 4.9e-170 601.7 456 69.3
Manes.13G058200 Manihot esculenta HOM05D006570 ORTHO05D008193 1.6e-168 596.7 456 66.7
Cpa.g.sc8.9 Carica papaya HOM05D006570 ORTHO05D008193 2.0e-168 596.3 469 68.0
Ciclev10015195m.g Citrus clementina HOM05D006570 ORTHO05D008193 5.6e-166 588.2 470 65.5
TWI18G1431 Tripterygium wilfordii HOM05D006570 ORTHO05D008193 4.7e-165 585.1 459 65.6
Haze_04512 Corylus avellana HOM05D006570 ORTHO05D008193 5.7e-163 578.2 433 67.4
Cfa006298 Carpinus fangiana HOM05D006570 ORTHO05D008193 4.1e-161 572.0 441 65.8
Aa31sc565G50 Aethionema arabicum HOM05D006570 ORTHO05D008193 3.9e-159 565.5 444 65.5
FvH4_3g28500 Fragaria vesca HOM05D006570 ORTHO05D008193 1.9e-158 563.1 430 66.5
Lj2A1109T67 Lonicera japonica HOM05D006570 ORTHO05D008193 2.5e-158 562.8 451 65.9
Prupe.6G214800 Prunus persica HOM05D006570 ORTHO05D008193 4.3e-158 562.0 423 68.1
Sabra14G0132400 Salix brachista HOM05D006570 ORTHO05D008193 9.5e-158 560.8 536 59.3
AL9U11910 Arabidopsis lyrata HOM05D006570 ORTHO05D008193 1.2e-157 560.5 437 65.9
Sp7g09050 Schrenkiella parvula HOM05D006570 ORTHO05D008193 1.2e-157 560.5 442 66.1
Lj3g0023743 Lotus japonicus HOM05D006570 ORTHO05D008193 2.8e-157 559.3 457 62.8
Actinidia11648 Actinidia chinensis HOM05D006570 ORTHO05D008193 8.0e-157 557.8 432 67.8
Glyma.07G059700 Glycine max HOM05D006570 ORTHO05D008193 1.0e-156 557.4 433 66.5
THA.LOC104815379 Tarenaya hassleriana HOM05D006570 ORTHO05D008193 1.0e-156 557.4 456 65.4
RcHm_v2.0_Chr5g0052821 Rosa chinensis HOM05D006570 ORTHO05D008193 2.3e-156 556.2 459 63.6
BcaC02g09469 Brassica carinata HOM05D006570 ORTHO05D008193 3.1e-156 555.8 437 66.4
CiPaw.07G077200 Carya illinoinensis HOM05D006570 ORTHO05D008193 3.1e-156 555.8 438 65.3
Phvul.010G109900 Phaseolus vulgaris HOM05D006570 ORTHO05D008193 1.2e-155 553.9 435 65.1
Carub.0007s3008 Capsella rubella HOM05D006570 ORTHO05D008193 1.5e-155 553.5 443 65.5
VMungo0331G0798 Vigna mungo HOM05D006570 ORTHO05D008193 1.5e-155 553.5 434 66.4
Dinv28772 Davidia involucrata HOM05D006570 ORTHO05D008193 2.6e-155 552.7 445 65.6
BcaB03g16147 Brassica carinata HOM05D006570 ORTHO05D008193 7.5e-155 551.2 441 65.1
Ca_23570_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 1.3e-154 550.4 461 63.1
Ca_23579_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 1.3e-154 550.4 461 63.1
CANSAT01G0840 Cannabis sativa HOM05D006570 ORTHO05D008193 3.7e-154 548.9 435 64.4
vmacro02851 Vaccinium macrocarpon HOM05D006570 ORTHO05D008193 3.7e-154 548.9 432 67.6
C04p43140 Brassica napus HOM05D006570 ORTHO05D008193 6.4e-154 548.1 433 65.6
FAN21G3910 Fragaria x ananassa HOM05D006570 ORTHO05D008193 6.4e-154 548.1 456 62.9
A04p09180 Brassica napus HOM05D006570 ORTHO05D008193 8.3e-154 547.7 459 63.6
CARHR218120 Cardamine hirsuta HOM05D006570 ORTHO05D008193 8.3e-154 547.7 439 65.4
Oeu020442.2 Olea europaea HOM05D006570 ORTHO05D008193 2.4e-153 546.2 442 63.8
TPR.G5123 Trifolium pratense HOM05D006570 ORTHO05D008193 1.2e-152 543.9 459 61.2
AT4G12740 Arabidopsis thaliana HOM05D006570 ORTHO05D008193 1.6e-152 543.5 431 65.4
Medtr8g028105 Medicago truncatula HOM05D006570 ORTHO05D008193 6.0e-152 541.6 464 61.2
Thhalv10024575m.g Eutrema salsugineum HOM05D006570 ORTHO05D008193 1.0e-151 540.8 415 66.0
MD15G1141300 Malus domestica HOM05D006570 ORTHO05D008193 3.0e-151 539.3 421 67.7
TAR362G0032 Trochodendron aralioides HOM05D006570 ORTHO05D008193 3.9e-151 538.9 417 66.4
Lalb_Chr10g0100201 Lupinus albus HOM05D006570 ORTHO05D008193 8.6e-151 537.7 456 61.6
arahy.Tifrunner.gnm1.ann1.N5JW36 Arachis hypogaea HOM05D006570 ORTHO05D008193 3.6e-149 532.3 460 61.5
GSVIVG01004124001 Vitis vinifera HOM05D006570 ORTHO05D008193 1.8e-148 530.0 432 65.0
arahy.Tifrunner.gnm1.ann1.L2UBUE Arachis hypogaea HOM05D006570 ORTHO05D008193 3.1e-148 529.3 460 62.2
Ah.11g050650 Amaranthus hybridus HOM05D006570 ORTHO05D008193 4.0e-148 528.9 457 61.9
Cc01_g15710 Coffea canephora HOM05D006570 ORTHO05D008193 4.0e-148 528.9 439 64.2
Migut.D00755 Erythranthe guttata HOM05D006570 ORTHO05D008193 6.8e-148 528.1 450 62.9
PGSC0003DMG400020287 Solanum tuberosum HOM05D006570 ORTHO05D008193 8.9e-148 527.7 450 62.2
Sopen09g012610 Solanum pennellii HOM05D006570 ORTHO05D008193 1.2e-147 527.3 430 64.2
Aqoxy1G01428 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 3.4e-147 525.8 439 62.2
HanXRQChr16g0508391 Helianthus annuus HOM05D006570 ORTHO05D008193 4.4e-147 525.4 426 62.2
PGR083G1749 Punica granatum HOM05D006570 ORTHO05D008193 4.4e-147 525.4 422 69.2
Solyc09g018850.3 Solanum lycopersicum HOM05D006570 ORTHO05D008193 4.4e-147 525.4 450 62.4
Peaxi162Scf12724g00014 Petunia axillaris HOM05D006570 ORTHO05D008193 7.5e-147 524.6 443 62.8
Aqoxy7G03970 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 1.3e-146 523.9 466 60.3
CsaV3_6G007600 Cucumis sativus L. HOM05D006570 ORTHO05D008193 3.7e-146 522.3 460 60.4
Hma1.2p1_0834F.1_g225720 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 3.7e-146 522.3 408 65.9
BolC4t25891H Brassica oleracea HOM05D006570 ORTHO05D008193 4.9e-146 521.9 431 63.3
BraA04t16613Z Brassica rapa HOM05D006570 ORTHO05D008193 3.2e-145 519.2 460 60.7
SalBow6G3933 Salvia bowleyana HOM05D006570 ORTHO05D008193 4.1e-145 518.8 452 60.6
PSO170G2695 Papaver somniferum HOM05D006570 ORTHO05D008193 9.2e-145 517.7 443 62.3
ECA236G3480 Erigeron canadensis HOM05D006570 ORTHO05D008193 6.0e-144 515.0 455 60.7
Nitab4.5_0005967g0010 Nicotiana tabacum HOM05D006570 ORTHO05D008193 6.0e-144 515.0 416 65.6
SalBow2G2795 Salvia bowleyana HOM05D006570 ORTHO05D008193 6.0e-144 515.0 452 60.2
ClCG06G001630 Citrullus lanatus HOM05D006570 ORTHO05D008193 1.0e-143 514.2 439 63.1
MBI10_g46813_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 9.5e-142 507.7 420 64.0
EL10Ac5g10565 Beta vulgaris HOM05D006570 ORTHO05D008193 1.2e-141 507.3 436 61.9
DCAR_012712 Daucus carota HOM05D006570 ORTHO05D008193 8.9e-140 501.1 410 65.9
Nitab4.5_0009028g0030 Nicotiana tabacum HOM05D006570 ORTHO05D008193 3.4e-139 499.2 455 60.4
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 4.1e-137 492.3 417 62.8
AUR62008045 Chenopodium quinoa HOM05D006570 ORTHO05D008193 1.3e-135 487.3 422 61.6
AUR62032342 Chenopodium quinoa HOM05D006570 ORTHO05D008193 1.3e-135 487.3 422 61.6
CAN.G3.13 Capsicum annuum HOM05D006570 ORTHO05D008193 8.6e-135 484.6 377 65.5
AUR62028620 Chenopodium quinoa HOM05D006570 ORTHO05D008193 8.6e-135 484.6 436 60.1
Hund09495 Selenicereus undatus HOM05D006570 ORTHO05D008193 1.9e-134 483.4 371 66.3
Sc05g0001500 Simmondsia chinensis HOM05D006570 ORTHO05D008193 1.9e-134 483.4 483 54.7
ATR0743G076 Amborella trichopoda HOM05D006570 ORTHO05D008193 9.6e-134 481.1 422 59.5
Psat4g158840 Pisum sativum HOM05D006570 ORTHO05D008193 1.4e-132 477.2 401 62.8
CDE09G0147 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 2.6e-131 473.0 426 59.2
HPP92_007590 Vanilla planifolia HOM05D006570 ORTHO05D008193 1.3e-130 470.7 426 59.6
SHI10196 Sapria himalayana HOM05D006570 ORTHO05D008193 1.4e-129 467.2 463 54.2
MELO3C022371.2 Cucumis melo HOM05D006570 ORTHO05D008193 2.1e-128 463.4 424 59.7
Os12g0211400 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 3.3e-126 456.1 446 56.3
Hma1.2p1_0834F.1_g225710 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 1.1e-121 441.0 378 62.2
Lsat_1_v5_gn_8_98640 Lactuca sativa HOM05D006570 ORTHO05D008193 5.4e-121 438.7 428 56.3
Zm00001eb411200 Zea mays HOM05D006570 ORTHO05D008193 8.7e-119 431.4 426 55.4
SEGI_12299 Sequoiadendron giganteum HOM05D006570 ORTHO05D008193 1.3e-117 427.6 458 52.4
FAN25G2405 Fragaria x ananassa HOM05D006570 ORTHO05D008193 3.6e-117 426.0 564 44.9
Os12g0212100 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 1.3e-114 417.5 359 62.1
unitig_90.g27554 Utricularia gibba HOM05D006570 ORTHO05D008193 9.0e-108 394.8 430 51.9
Eucgr.H00676 Eucalyptus grandis HOM05D006570 ORTHO05D008193 1.3e-103 380.9 312 64.1
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 1.8e-103 380.6 505 46.5
Hma1.2p1_1756F.1_g301050 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 6.7e-103 378.6 320 62.2
Actinidia23139 Actinidia chinensis HOM05D006570 ORTHO05D008193 5.3e-100 369.0 440 49.3
MBI10_g40441_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 6.5e-98 362.1 318 60.7
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 1.4e-97 360.9 504 43.3
FAN11G0847 Fragaria x ananassa HOM05D006570 ORTHO05D008193 1.4e-79 301.2 240 63.3
SMO202G0040 Selaginella moellendorffii HOM05D006570 ORTHO05D008193 4.4e-78 296.2 301 53.5
QL01p050877 Quercus lobata HOM05D006570 ORTHO05D008193 5.7e-78 295.8 256 62.5
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 3.0e-71 273.5 460 38.3
PRCOL_00001086 Prasinoderma coloniale HOM05D006570 ORTHO05D008193 2.4e-68 263.8 416 42.5
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 1.6e-59 234.6 526 32.3
CSS0008113 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 1.4e-55 221.5 126 84.9
CSS0032158 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 1.4e-55 221.5 126 84.9
GSVIVG01038286001 Vitis vinifera HOM05D006570 ORTHO05D008193 5.2e-55 219.5 185 62.2
Ca_29093_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 3.9e-42 176.8 295 38.3
DCAR_012713 Daucus carota HOM05D006570 ORTHO05D008193 8.6e-42 175.6 140 65.0
QL01p050896 Quercus lobata HOM05D006570 ORTHO05D008193 2.6e-38 164.1 121 68.6
QL05p014267 Quercus lobata HOM05D006570 ORTHO05D008193 3.4e-30 137.1 190 45.8
CDE02G1275 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 3.2e-28 130.6 142 52.1
QL05p014599 Quercus lobata HOM05D006570 ORTHO05D008193 4.1e-28 130.2 129 57.4
Glyma.16G028601 Glycine max HOM05D006570 ORTHO05D008193 1.3e-26 125.2 108 55.6
PGR142G0081 Punica granatum HOM05D006570 ORTHO05D008193 1.1e-23 115.5 138 50.0
CBR_g38520 Chara braunii HOM05D000019 ORTHO05D000048 5.2e-23 113.2 63 81.0
CBR_g38518 Chara braunii HOM05D000019 ORTHO05D000048 4.6e-11 73.6 141 34.8
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 3.3e-09 67.4 200 28.5
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 7.3e-09 66.2 200 28.0
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.6e-08 65.1 198 28.3
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 1.6e-08 65.1 200 28.0
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 1.6e-08 65.1 162 31.5
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 2.1e-08 64.7 198 28.3
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 4.8e-08 63.5 215 27.9
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 4.8e-08 63.5 215 27.4
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 6.2e-08 63.2 190 28.4
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 6.2e-08 63.2 187 28.9
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 1.1e-07 62.4 190 28.4
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.1e-07 62.4 190 28.4
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 1.1e-07 62.4 187 29.4
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 1.4e-07 62.0 215 27.4
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 1.4e-07 62.0 215 27.4
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 1.4e-07 62.0 181 29.3
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 1.8e-07 61.6 197 28.4
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 1.8e-07 61.6 215 27.4
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 1.8e-07 61.6 215 27.4
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 1.8e-07 61.6 215 27.4
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 3.1e-07 60.8 163 28.8
Lj3g0009399 Lotus japonicus HOM05D004358 ORTHO05D004960 3.1e-07 60.8 198 27.3
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 5.3e-07 60.1 163 28.8
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 5.3e-07 60.1 187 27.3
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 5.3e-07 60.1 151 30.5
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 6.9e-07 59.7 198 26.8
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 9.0e-07 59.3 148 29.7
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 9.0e-07 59.3 198 26.8
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 9.0e-07 59.3 192 27.6
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 9.0e-07 59.3 198 26.3
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 9.0e-07 59.3 207 27.1
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 9.0e-07 59.3 202 28.2
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 1.2e-06 58.9 198 26.3
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 1.2e-06 58.9 141 31.2
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 1.5e-06 58.5 211 27.0
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 1.5e-06 58.5 208 26.9
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 1.5e-06 58.5 138 28.3
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 2.0e-06 58.2 198 26.8
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 2.0e-06 58.2 187 28.3
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 2.0e-06 58.2 203 25.6
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 2.6e-06 57.8 141 31.2
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 2.6e-06 57.8 133 33.1
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 2.6e-06 57.8 197 26.9
Glyma.11G128600 Glycine max HOM05D004358 ORTHO05D004960 3.4e-06 57.4 198 25.8
Sabra07G0103600 Salix brachista HOM05D004358 ORTHO05D004960 3.4e-06 57.4 163 28.8
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 4.5e-06 57.0 145 31.0
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 4.5e-06 57.0 202 27.2
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 5.8e-06 56.6 198 26.3
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 5.8e-06 56.6 178 26.4
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 5.8e-06 56.6 198 25.8
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 5.8e-06 56.6 208 26.9
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 5.8e-06 56.6 186 28.0
Medtr2g098660 Medicago truncatula HOM05D004358 ORTHO05D004960 7.6e-06 56.2 196 27.0
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 7.6e-06 56.2 220 26.4
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 7.6e-06 56.2 148 30.4
arahy.Tifrunner.gnm1.ann1.98UW30 Arachis hypogaea HOM05D004358 ORTHO05D004960 9.9e-06 55.8 198 25.8
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 9.9e-06 55.8 203 25.6
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 9.9e-06 55.8 206 26.2
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 9.9e-06 55.8 130 33.8


User provided reference genes

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