Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 8.5e-159 563.5 269 100.0
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 2.5e-118 429.1 251 81.3
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.7e-98 363.2 243 71.6
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 1.9e-97 359.8 243 70.8
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.4e-97 359.4 243 70.0
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.6e-96 356.7 249 68.7
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 2.7e-96 355.9 243 68.7
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 3.5e-96 355.5 241 69.7
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 4.6e-96 355.1 243 70.8
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 1.0e-95 354.0 243 66.7
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 3.9e-95 352.1 243 70.0
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 8.1e-93 344.4 244 67.2
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.8e-92 343.2 241 67.2
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 2.4e-92 342.8 243 66.7
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 3.1e-92 342.4 251 64.5
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 4.0e-92 342.0 235 69.4
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 5.3e-92 341.7 235 70.2
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.0e-91 339.7 243 66.7
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 7.6e-91 337.8 244 65.6
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 9.9e-91 337.4 241 63.5
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.9e-90 335.9 244 67.6
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 2.9e-90 335.9 235 68.1
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 1.4e-89 333.6 235 66.4
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 3.2e-89 332.4 237 65.8
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 4.2e-89 332.0 243 63.8
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 7.1e-89 331.3 237 65.8
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 1.6e-88 330.1 235 67.7
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.6e-88 330.1 243 64.2
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 1.6e-88 330.1 239 67.4
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.7e-88 329.3 243 63.4
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 1.0e-87 327.4 243 61.7
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 5.1e-87 325.1 243 63.0
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 1.5e-86 323.6 245 62.9
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 2.5e-86 322.8 243 64.6
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 3.3e-86 322.4 243 64.6
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 2.1e-85 319.7 243 62.1
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 4.8e-85 318.5 243 63.0
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 2.4e-84 316.2 246 61.4
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 9.0e-84 314.3 243 62.6
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 9.0e-84 314.3 241 62.2
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.0e-83 313.2 241 62.2
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 2.0e-83 313.2 239 61.5
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.0e-83 313.2 230 63.9
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 1.0e-82 310.8 230 64.3
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 1.7e-82 310.1 236 61.4
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 4.9e-82 308.5 237 60.8
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 4.9e-82 308.5 235 63.0
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 6.5e-82 308.1 230 63.5
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.4e-81 307.0 230 63.5
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 3.2e-81 305.8 253 60.9
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 3.2e-81 305.8 248 61.3
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 4.2e-81 305.4 237 62.4
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 4.2e-81 305.4 242 59.5
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 5.5e-81 305.1 230 62.6
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 9.3e-81 304.3 248 61.7
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 9.3e-81 304.3 262 58.4
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.2e-80 303.9 248 61.3
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.1e-80 303.1 248 61.3
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.1e-80 303.1 230 62.6
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.5e-80 302.4 247 60.3
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 3.5e-80 302.4 236 61.0
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 3.5e-80 302.4 236 61.0
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 4.6e-80 302.0 249 60.6
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 1.3e-79 300.4 243 59.3
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 3.9e-79 298.9 261 57.9
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 5.1e-79 298.5 238 60.1
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 6.7e-79 298.1 237 62.0
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 6.7e-79 298.1 237 62.0
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 2.5e-78 296.2 236 61.4
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 4.3e-78 295.4 247 59.9
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 4.3e-78 295.4 241 59.8
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 5.7e-78 295.0 242 59.9
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 5.7e-78 295.0 242 59.9
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 9.6e-78 294.3 242 59.5
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 9.6e-78 294.3 247 59.9
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 2.8e-77 292.7 239 61.1
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 4.8e-77 292.0 241 60.2
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 1.4e-76 290.4 249 58.6
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 1.4e-76 290.4 249 59.0
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 2.4e-76 289.7 235 59.1
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 2.4e-76 289.7 236 61.9
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 3.1e-76 289.3 243 58.0
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 3.1e-76 289.3 246 57.7
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 4.1e-76 288.9 204 68.1
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 4.1e-76 288.9 249 57.8
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 1.2e-75 287.3 240 58.8
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 1.5e-75 287.0 218 63.8
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 1.5e-75 287.0 275 53.5
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 3.4e-75 285.8 237 57.4
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 3.4e-75 285.8 237 57.4
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 4.5e-75 285.4 236 57.6
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.0e-74 284.3 216 62.5
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 2.2e-74 283.1 247 55.1
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 6.5e-74 281.6 253 55.3
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 1.1e-73 280.8 238 58.0
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 5.5e-73 278.5 239 56.9
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 7.2e-73 278.1 229 56.3
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 9.3e-73 277.7 203 65.0
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.2e-72 277.3 237 57.0
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.2e-72 277.3 241 58.1
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 2.1e-72 276.6 238 56.3
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 3.6e-72 275.8 241 55.6
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 1.0e-71 274.2 240 55.0
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.8e-71 273.5 244 55.3
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 1.8e-71 273.5 252 55.2
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.8e-71 273.5 252 55.2
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 1.8e-71 273.5 238 56.3
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 3.0e-71 272.7 237 55.3
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 8.7e-71 271.2 250 56.0
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.1e-70 270.8 242 57.4
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.5e-70 270.4 242 55.8
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 1.5e-70 270.4 233 54.5
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 2.5e-70 269.6 235 57.0
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 2.5e-70 269.6 238 56.3
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 2.5e-70 269.6 238 56.3
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.5e-70 269.6 203 63.1
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 4.3e-70 268.9 236 54.2
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 5.7e-70 268.5 238 55.0
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 7.4e-70 268.1 252 53.6
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 7.4e-70 268.1 235 56.6
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.3e-69 267.3 241 55.2
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 2.2e-69 266.5 240 55.8
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 4.8e-69 265.4 241 53.5
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 4.8e-69 265.4 241 53.5
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.8e-68 263.5 240 54.2
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 1.8e-68 263.5 238 55.0
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.4e-68 263.1 240 55.4
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 3.1e-68 262.7 240 56.2
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 4.1e-68 262.3 224 59.8
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 4.1e-68 262.3 245 51.0
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 5.3e-68 261.9 247 52.6
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 5.3e-68 261.9 251 54.2
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 6.9e-68 261.5 216 58.3
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 7.7e-67 258.1 241 56.0
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 5.0e-66 255.4 239 52.7
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 9.4e-65 251.1 246 52.0
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 2.1e-64 250.0 231 51.9
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 3.6e-64 249.2 231 52.8
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.7e-61 240.4 238 52.1
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 1.7e-61 240.4 236 52.1
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 4.8e-61 238.8 212 54.2
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 6.3e-61 238.4 258 50.4
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.4e-60 237.3 176 66.5
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 1.5e-59 233.8 223 55.2
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 1.5e-59 233.8 224 52.7
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 3.4e-59 232.6 226 50.9
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 1.3e-58 230.7 230 51.7
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 4.2e-57 225.7 202 55.9
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 9.4e-57 224.6 238 48.7
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 2.1e-56 223.4 243 46.1
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 3.9e-55 219.2 244 48.8
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 4.4e-54 215.7 157 66.9
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 7.4e-54 214.9 185 58.4
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.8e-53 213.0 241 48.5
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.8e-53 212.2 164 60.4
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 1.0e-50 204.5 163 58.3
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 1.0e-50 204.5 242 45.0
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 6.1e-48 195.3 152 59.9
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 8.8e-47 191.4 207 49.8
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 5.3e-44 182.2 257 40.9
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.9e-41 173.7 200 47.5
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.6e-40 170.6 200 47.5
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 2.7e-40 169.9 264 37.1
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.1e-36 157.9 129 58.1
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 1.0e-34 151.4 156 49.4
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.2e-32 144.4 107 61.7
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 2.3e-31 140.2 103 66.0
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 2.0e-30 137.1 116 58.6
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 2.6e-30 136.7 152 47.4
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 9.8e-30 134.8 120 57.5
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 8.6e-26 121.7 93 62.4
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 2.5e-25 120.2 118 52.5
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 1.7e-21 107.5 89 59.6
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 4.6e-19 99.4 98 51.0
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 2.3e-18 97.1 73 63.0
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 8.6e-18 95.1 166 34.9
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 1.1e-17 94.7 147 38.8
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 1.9e-17 94.0 79 49.4
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 8.0e-16 88.6 80 53.8
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 6.8e-15 85.5 192 31.8
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 4.4e-14 82.8 89 39.3
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 5.6e-09 65.9 51 56.9
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 9.9e-06 55.1 170 23.5


User provided reference genes

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