Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 6.0e-208 727.2 364 100.0
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 3.4e-187 658.3 364 91.2
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 1.1e-164 583.6 364 79.1
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 1.0e-162 577.0 364 78.3
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 2.1e-160 569.3 373 76.4
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 3.6e-160 568.5 364 77.2
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 3.6e-160 568.5 364 76.4
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 6.1e-160 567.8 374 75.7
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 1.0e-159 567.0 371 77.4
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 2.0e-158 562.8 371 76.8
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 3.4e-158 562.0 372 77.2
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 5.7e-158 561.2 364 76.9
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 1.3e-157 560.1 364 76.9
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 2.2e-157 559.3 374 75.1
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 4.8e-157 558.1 364 75.8
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 1.8e-156 556.2 364 75.5
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 9.1e-156 553.9 365 76.4
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 1.2e-155 553.5 364 75.3
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 1.6e-155 553.1 373 74.8
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 2.7e-155 552.4 364 73.9
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 1.0e-154 550.4 366 74.6
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 2.3e-154 549.3 380 73.2
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 2.3e-154 549.3 379 74.4
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 2.9e-154 548.9 366 74.3
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.1e-153 547.0 379 74.1
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 1.1e-153 547.0 364 75.8
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.5e-153 546.6 379 74.4
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 1.9e-153 546.2 365 75.6
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 2.5e-153 545.8 365 73.4
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 4.2e-153 545.0 367 74.1
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 5.5e-153 544.7 364 75.3
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 9.5e-153 543.9 364 75.0
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 2.1e-152 542.7 365 75.3
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 3.6e-152 542.0 365 74.8
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 4.7e-152 541.6 366 73.2
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 8.0e-152 540.8 366 73.5
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 1.0e-151 540.4 379 72.8
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 1.4e-151 540.0 371 72.5
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 1.4e-151 540.0 366 73.2
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 1.8e-151 539.7 366 73.2
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 1.8e-151 539.7 373 72.7
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 2.3e-151 539.3 364 73.4
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 4.0e-151 538.5 371 72.0
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 4.0e-151 538.5 364 73.6
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 4.0e-151 538.5 364 73.6
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 6.8e-151 537.7 364 73.6
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 1.5e-150 536.6 366 72.7
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 1.5e-150 536.6 366 72.7
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 2.0e-150 536.2 372 71.2
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 3.4e-150 535.4 379 69.9
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 4.4e-150 535.0 371 71.7
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 1.7e-149 533.1 366 72.4
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 4.9e-149 531.6 368 72.0
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 1.1e-148 530.4 379 72.0
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 1.4e-148 530.0 365 73.2
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 1.8e-148 529.6 368 72.3
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 9.2e-148 527.3 367 72.8
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 1.2e-147 526.9 365 72.6
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 1.6e-147 526.6 377 70.8
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 2.0e-147 526.2 367 72.2
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 5.9e-147 524.6 365 72.3
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 5.9e-147 524.6 379 68.6
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 1.0e-146 523.9 365 72.3
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 1.7e-146 523.1 365 72.3
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 2.3e-146 522.7 379 71.0
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 6.6e-146 521.2 382 68.8
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 6.6e-146 521.2 379 70.7
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 5.6e-145 518.1 351 72.9
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 5.2e-143 511.5 368 69.3
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 8.9e-143 510.8 368 70.1
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 4.4e-142 508.4 378 67.5
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 5.8e-142 508.1 365 70.4
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 5.8e-142 508.1 397 67.0
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 7.5e-142 507.7 376 67.6
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 2.2e-141 506.1 364 69.8
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 2.9e-141 505.8 364 70.3
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 3.7e-141 505.4 364 70.3
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 8.3e-141 504.2 366 69.1
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 2.0e-139 499.6 383 66.1
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 1.3e-138 496.9 384 66.7
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 3.9e-138 495.4 317 76.0
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 3.9e-138 495.4 357 69.2
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 5.0e-138 495.0 369 66.7
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 5.0e-138 495.0 369 66.4
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 2.5e-137 492.7 365 68.2
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 2.8e-136 489.2 378 65.3
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 3.1e-135 485.7 365 67.9
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 8.9e-135 484.2 312 78.2
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 9.8e-134 480.7 365 66.0
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 8.3e-133 477.6 366 66.9
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 1.9e-132 476.5 367 66.5
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 7.0e-132 474.6 366 66.7
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 1.2e-131 473.8 368 66.0
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 2.1e-131 473.0 368 65.8
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 2.7e-131 472.6 367 65.4
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 7.8e-131 471.1 368 65.2
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 1.7e-130 469.9 368 64.9
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 1.5e-129 466.8 366 65.3
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 2.5e-129 466.1 360 65.0
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 1.6e-128 463.4 366 65.0
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 2.8e-128 462.6 365 64.9
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 8.1e-128 461.1 366 65.3
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 1.4e-127 460.3 366 64.8
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 1.8e-127 459.9 366 64.5
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 2.3e-127 459.5 351 68.7
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 2.0e-126 456.4 389 62.0
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 8.3e-125 451.1 366 62.6
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 1.4e-124 450.3 367 65.9
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 1.7e-122 443.4 365 63.0
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 2.5e-121 439.5 357 63.9
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 4.3e-121 438.7 367 59.9
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.1e-119 434.1 317 68.1
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 2.4e-119 433.0 365 60.0
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 8.9e-119 431.0 342 63.2
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 3.2e-116 422.5 318 68.2
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 2.5e-113 412.9 393 53.2
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 4.3e-113 412.1 297 72.4
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 4.0e-111 405.6 371 58.5
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 3.2e-108 396.0 369 56.6
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 2.4e-103 379.8 275 70.2
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 9.9e-102 374.4 362 53.9
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 1.9e-100 370.2 298 64.1
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 1.2e-94 350.9 308 59.4
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 3.3e-81 306.2 191 83.2
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.7e-69 267.3 164 82.9
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 7.2e-68 261.9 375 40.0
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 1.6e-67 260.8 251 52.2
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 1.0e-66 258.1 161 79.5
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 3.7e-64 249.6 258 54.7
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 2.1e-59 233.8 205 56.6
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 2.1e-59 233.8 327 45.0
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 4.1e-55 219.5 326 37.1
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.6e-54 216.9 159 71.7
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.6e-49 200.3 167 64.1
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 2.8e-48 196.8 181 53.6
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 9.1e-47 191.8 167 62.3
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 1.3e-45 188.0 228 44.3
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 7.5e-41 172.2 157 52.2
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 1.5e-36 157.9 133 67.7
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 3.3e-36 156.8 133 66.9
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.3e-32 144.8 93 71.0
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 6.3e-32 142.5 121 63.6
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 1.6e-30 137.9 81 86.4
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 1.4e-26 124.8 121 55.4
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 4.9e-24 116.3 84 70.2
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 1.3e-21 108.2 179 39.1
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 4.9e-16 89.7 51 82.4
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 4.9e-16 89.7 51 82.4
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 3.2e-15 87.0 100 51.0


User provided reference genes

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