Gene: Cc10_g13130

General Information

Structural Information

  • Species Coffea canephora
  • Gene Identifier Cc10_g13130
  • Transcript Identifier Cc10_g13130.1
  • Gene Type Coding gene
  • Location chr10 : 22893769-22897150 : negative

Gene Family Information

  • ID HOM05D005037
  • #Genes/#Species 148/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • UniProtKB B9S2M8
  • UniProtKB E0CQM1
  • UniProtKB P70122
  • UniProtKB Q3SWZ6
  • UniProtKB Q5RK30
  • UniProtKB B9GTN9
  • id GSCOCG00035336001

Descriptions

  • Description Ribosome maturation protein SBDS
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042256
IEA
InterPromature ribosome assembly
GO:0042254
IEA
InterProribosome biogenesis
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT1G43860

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
InterProzinc ion binding
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT1G43860

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR039100 Ribosome maturation protein Sdo1/SBDS-like
IPR019783 Ribosome maturation protein Sdo1/SBDS, N-terminal
IPR002140 Ribosome maturation protein Sdo1/SBDS
IPR018978 Ribosome maturation protein Sdo1/SBDS, C-terminal
IPR003604 Matrin/U1-C-like, C2H2-type zinc finger
IPR036786 Ribosome maturation protein SBDS, N-terminal domain superfamily
IPR037188 Ribosome maturation protein Sdo1/SBDS, central domain superfamily
IPR036236 Zinc finger C2H2 superfamily
Mapman id Description
17.1.2.2.3.5 Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.60S ribosomal subunit cytoplasmic maturation.maturation factor (Sdo1)