Gene: Duzib116G0940
General Information
Structural Information
- Species Durio zibethinus
- Gene Identifier Duzib116G0940
- Transcript Identifier Duzib116G0940.01
- Gene Type Coding gene
- Location NW_019167949.1 : 6264831-6267257 : positive
Gene Family Information
- ID HOM05D005037
- #Genes/#Species 148/98
- Phylogenetic origin
- ID ORTHO05D006274
- #Genes/#Species 145/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- name LOC111315679
- name XM_022917587.1
- pid XP_022773322.1
- id gene-LOC111315679
- uniprot A0A6P6B816
Descriptions
- product ribosome maturation protein SBDS-like
- Description The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042256 | IEA | GOA Database | mature ribosome assembly | |
| GO:0042256 | IEA | InterPro | mature ribosome assembly | |
| GO:0042254 | IEA | GOA Database | ribosome biogenesis | |
| GO:0042254 | IEA | InterPro | ribosome biogenesis | |
| GO:0006355 | ISO | PLAZA Integrative Orthology | regulation of transcription, DNA-templated | AT1G43860 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0008270 | IEA | GOA Database | zinc ion binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0000976 | ISO | PLAZA Integrative Orthology | transcription cis-regulatory region binding | AT1G43860 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036236 | Zinc finger C2H2 superfamily |
| IPR002140 | Ribosome maturation protein Sdo1/SBDS |
| IPR018978 | Ribosome maturation protein Sdo1/SBDS, C-terminal |
| IPR036786 | Ribosome maturation protein SBDS, N-terminal domain superfamily |
| IPR037188 | Ribosome maturation protein Sdo1/SBDS, central domain superfamily |
| IPR019783 | Ribosome maturation protein Sdo1/SBDS, N-terminal |
| IPR003604 | Matrin/U1-C-like, C2H2-type zinc finger |
| IPR039100 | Ribosome maturation protein Sdo1/SBDS-like |
| Mapman id | Description |
|---|---|
| 17.1.2.2.3.5 | Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.60S ribosomal subunit cytoplasmic maturation.maturation factor (Sdo1) |