Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G628 Trifolium pratense HOM05D001458 ORTHO05D006787 5.4e-133 477.6 236 100.0
TPR.G40364 Trifolium pratense HOM05D001458 ORTHO05D411135 7.0e-32 141.7 72 94.4
Medtr5g084590 Medicago truncatula HOM05D001458 ORTHO05D006787 2.7e-31 139.8 152 50.0
CiPaw.09G182000 Carya illinoinensis HOM05D001458 ORTHO05D006787 3.6e-20 102.8 189 38.6
MELO3C003071.2 Cucumis melo HOM05D001458 ORTHO05D006787 8.1e-20 101.7 189 39.2
Prupe.6G243200 Prunus persica HOM05D001458 ORTHO05D006787 1.4e-19 100.9 189 40.2
Cfa017488 Carpinus fangiana HOM05D001458 ORTHO05D006787 2.3e-19 100.1 190 38.4
Haze_20671 Corylus avellana HOM05D001458 ORTHO05D006787 2.3e-19 100.1 190 38.4
CsaV3_4G024390 Cucumis sativus L. HOM05D001458 ORTHO05D006787 2.3e-19 100.1 189 38.6
DCAR_009271 Daucus carota HOM05D001458 ORTHO05D006787 3.1e-19 99.8 189 39.2
Lj3A977T51 Lonicera japonica HOM05D001458 ORTHO05D006787 3.1e-19 99.8 189 38.6
QL07p045562 Quercus lobata HOM05D001458 ORTHO05D006787 3.1e-19 99.8 189 38.6
Sed0021994 Sechium edule HOM05D001458 ORTHO05D006787 4.0e-19 99.4 189 38.1
Migut.L01653 Erythranthe guttata HOM05D001458 ORTHO05D006787 6.8e-19 98.6 189 39.2
CAN.G350.46 Capsicum annuum HOM05D001458 ORTHO05D006787 8.9e-19 98.2 189 37.6
PGR004G0986 Punica granatum HOM05D001458 ORTHO05D006787 1.2e-18 97.8 189 37.6
GSVIVG01025540001 Vitis vinifera HOM05D001458 ORTHO05D006787 1.2e-18 97.8 189 37.6
ClCG04G008770 Citrullus lanatus HOM05D001458 ORTHO05D006787 1.5e-18 97.4 183 39.3
Ciclev10011761m.g Citrus clementina HOM05D001458 ORTHO05D006787 2.0e-18 97.1 189 37.6
arahy.Tifrunner.gnm1.ann1.DP4C8A Arachis hypogaea HOM05D001458 ORTHO05D006787 2.6e-18 96.7 189 38.1
CSS0026634 Camellia sinensis var. sinensis HOM05D001458 ORTHO05D006787 2.6e-18 96.7 157 41.4
CARHR210510 Cardamine hirsuta HOM05D001458 ORTHO05D006787 2.6e-18 96.7 189 38.1
Cc06_g03430 Coffea canephora HOM05D001458 ORTHO05D006787 2.6e-18 96.7 189 37.6
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 2.6e-18 96.7 147 43.5
Lj5g0024683 Lotus japonicus HOM05D001458 ORTHO05D006787 2.6e-18 96.7 189 38.6
Sp6g39760 Schrenkiella parvula HOM05D001458 ORTHO05D006787 2.6e-18 96.7 189 37.6
CANSAT80G0404 Cannabis sativa HOM05D001458 ORTHO05D006787 3.4e-18 96.3 189 39.2
Nitab4.5_0000848g0150 Nicotiana tabacum HOM05D001458 ORTHO05D006787 3.4e-18 96.3 189 37.0
Thhalv10015802m.g Eutrema salsugineum HOM05D001458 ORTHO05D006787 4.4e-18 95.9 189 37.6
Medtr1g067040 Medicago truncatula HOM05D001458 ORTHO05D006787 4.4e-18 95.9 189 38.1
Nitab4.5_0006316g0010 Nicotiana tabacum HOM05D001458 ORTHO05D006787 4.4e-18 95.9 189 37.0
PSO339G6008 Papaver somniferum HOM05D001458 ORTHO05D006787 4.4e-18 95.9 189 37.6
PSO384G1578 Papaver somniferum HOM05D001458 ORTHO05D006787 4.4e-18 95.9 189 37.6
RhsimUnG0119500 Rhododendron simsii HOM05D001458 ORTHO05D006787 4.4e-18 95.9 157 41.4
Eucgr.K03202 Eucalyptus grandis HOM05D001458 ORTHO05D006787 5.8e-18 95.5 189 37.0
Glyma.10G048300 Glycine max HOM05D001458 ORTHO05D006787 5.8e-18 95.5 189 38.1
Glyma.13G136100 Glycine max HOM05D001458 ORTHO05D006787 5.8e-18 95.5 189 38.1
SalBow4G2907 Salvia bowleyana HOM05D001458 ORTHO05D006787 5.8e-18 95.5 189 37.0
Hma1.2p1_0350F.1_g132690 Hydrangea macrophylla HOM05D001458 ORTHO05D006787 7.5e-18 95.1 147 42.9
Lsat_1_v5_gn_6_29580 Lactuca sativa HOM05D001458 ORTHO05D006787 7.5e-18 95.1 157 41.4
Peaxi162Scf01517g00015 Petunia axillaris HOM05D001458 ORTHO05D006787 7.5e-18 95.1 189 37.0
Carub.0006s0162 Capsella rubella HOM05D001458 ORTHO05D006787 9.8e-18 94.7 157 40.8
HanXRQChr02g0051861 Helianthus annuus HOM05D001458 ORTHO05D006787 9.8e-18 94.7 189 40.2
Manes.09G070800 Manihot esculenta HOM05D001458 ORTHO05D006787 9.8e-18 94.7 157 40.8
AL6G12090 Arabidopsis lyrata HOM05D001458 ORTHO05D006787 1.3e-17 94.4 157 40.8
AT5G02820 Arabidopsis thaliana HOM05D001458 ORTHO05D006787 1.3e-17 94.4 157 40.8
A10p32900 Brassica napus HOM05D001458 ORTHO05D006787 1.3e-17 94.4 157 40.8
C09p73830 Brassica napus HOM05D001458 ORTHO05D006787 1.3e-17 94.4 157 40.8
BolC9t60117H Brassica oleracea HOM05D001458 ORTHO05D006787 1.3e-17 94.4 157 40.8
BraA10t45327Z Brassica rapa HOM05D001458 ORTHO05D006787 1.3e-17 94.4 157 40.8
ECA233G5957 Erigeron canadensis HOM05D001458 ORTHO05D006787 1.3e-17 94.4 157 40.1
Nn2g10614 Nelumbo nucifera HOM05D001458 ORTHO05D006787 1.3e-17 94.4 189 37.0
PGSC0003DMG400027900 Solanum tuberosum HOM05D001458 ORTHO05D006787 1.3e-17 94.4 189 37.6
THA.LOC104816314 Tarenaya hassleriana HOM05D001458 ORTHO05D006787 1.3e-17 94.4 157 40.8
arahy.Tifrunner.gnm1.ann1.YX38EM Arachis hypogaea HOM05D001458 ORTHO05D006787 1.7e-17 94.0 189 38.1
Potri.006G132600 Populus trichocarpa HOM05D001458 ORTHO05D006787 1.7e-17 94.0 157 41.4
Solyc09g007210.4 Solanum lycopersicum HOM05D001458 ORTHO05D006787 1.7e-17 94.0 189 37.6
Sopen09g002080 Solanum pennellii HOM05D001458 ORTHO05D006787 1.7e-17 94.0 189 37.6
TPR.G35661 Trifolium pratense HOM05D001458 ORTHO05D006787 1.7e-17 94.0 189 39.7
Aa31LG1G22080 Aethionema arabicum HOM05D001458 ORTHO05D006787 2.2e-17 93.6 189 37.0
EL10Ac7g17326 Beta vulgaris HOM05D001458 ORTHO05D006787 2.2e-17 93.6 189 36.5
Ca_02309_v3 Cicer arietinum L. HOM05D001458 ORTHO05D006787 2.2e-17 93.6 189 38.1
COL.COLO4_27103 Corchorus olitorius HOM05D001458 ORTHO05D006787 2.2e-17 93.6 189 37.6
SEGI_09198 Sequoiadendron giganteum HOM05D001458 ORTHO05D006787 2.2e-17 93.6 153 41.2
Duzib128G1651 Durio zibethinus HOM05D001458 ORTHO05D006787 2.9e-17 93.2 189 37.0
Lalb_Chr21g0314581 Lupinus albus HOM05D001458 ORTHO05D006787 2.9e-17 93.2 197 37.1
Psat0ss6317g0080 Pisum sativum HOM05D001458 ORTHO05D006787 2.9e-17 93.2 189 37.6
TWI18G0556 Tripterygium wilfordii HOM05D001458 ORTHO05D006787 2.9e-17 93.2 189 37.0
Actinidia11230 Actinidia chinensis HOM05D001458 ORTHO05D006787 3.7e-17 92.8 157 40.1
Gorai.009G420900 Gossypium raimondii HOM05D001458 ORTHO05D006787 3.7e-17 92.8 189 36.5
Sabra06G0104100 Salix brachista HOM05D001458 ORTHO05D006787 3.7e-17 92.8 157 40.8
Sc07g0006220 Simmondsia chinensis HOM05D001458 ORTHO05D006787 6.4e-17 92.0 189 37.6
Thecc.05G052100 Theobroma cacao HOM05D001458 ORTHO05D006787 6.4e-17 92.0 189 36.0
TAR369G1107 Trochodendron aralioides HOM05D001458 ORTHO05D006787 6.4e-17 92.0 147 40.8
Gohir.D04G116300 Gossypium hirsutum HOM05D001458 ORTHO05D006787 8.3e-17 91.7 189 36.5
Aqoxy4G03150 Aquilegia oxysepala HOM05D001458 ORTHO05D006787 1.1e-16 91.3 147 41.5
MD04G1113900 Malus domestica HOM05D001458 ORTHO05D006787 1.1e-16 91.3 174 39.1
Oeu034821.1 Olea europaea HOM05D001458 ORTHO05D006787 1.1e-16 91.3 189 36.5
FvH4_1g22710 Fragaria vesca HOM05D001458 ORTHO05D006787 1.4e-16 90.9 190 37.4
FAN19G2582 Fragaria x ananassa HOM05D001458 ORTHO05D006787 1.4e-16 90.9 190 37.4
FAN23G1932 Fragaria x ananassa HOM05D001458 ORTHO05D006787 1.4e-16 90.9 190 37.4
FAN26G1855 Fragaria x ananassa HOM05D001458 ORTHO05D006787 1.4e-16 90.9 190 37.4
Phvul.007G162700 Phaseolus vulgaris HOM05D001458 ORTHO05D006787 1.4e-16 90.9 189 37.6
RcHm_v2.0_Chr2g0116961 Rosa chinensis HOM05D001458 ORTHO05D006787 1.4e-16 90.9 189 36.5
SGA_v2.0_scaffold94G28657 Striga asiatica HOM05D001458 ORTHO05D006787 1.4e-16 90.9 189 36.5
Cpa.g.sc45.25 Carica papaya HOM05D001458 ORTHO05D006787 1.9e-16 90.5 189 36.5
AUR62040528 Chenopodium quinoa HOM05D001458 ORTHO05D006787 1.9e-16 90.5 189 36.5
AUR62042916 Chenopodium quinoa HOM05D001458 ORTHO05D006787 1.9e-16 90.5 189 36.5
Ah.15g092050 Amaranthus hybridus HOM05D001458 ORTHO05D006787 2.4e-16 90.1 189 36.5
Cre02.g084800 Chlamydomonas reinhardtii HOM05D001458 ORTHO05D006787 2.4e-16 90.1 147 39.5
Atru.BG.202.p Acer truncatum HOM05D001458 ORTHO05D006787 3.2e-16 89.7 189 37.0
MBI14_g28308_MAGBIO Magnolia biondii HOM05D001458 ORTHO05D006787 3.2e-16 89.7 189 36.0
MCO01G458 Micromonas commoda HOM05D001458 ORTHO05D006787 4.1e-16 89.4 149 37.6
VMungo0464G1099 Vigna mungo HOM05D001458 ORTHO05D006787 4.1e-16 89.4 189 37.6
HPP92_003602 Vanilla planifolia HOM05D001458 ORTHO05D006787 5.4e-16 89.0 147 38.1
ATR0594G128 Amborella trichopoda HOM05D001458 ORTHO05D006787 9.2e-16 88.2 147 39.5
AagrBONN_evm.TU.Sc2ySwM_228.407 Anthoceros agrestis HOM05D001458 ORTHO05D006787 1.2e-15 87.8 147 39.5
Pp3c8_12030 Physcomitrium patens HOM05D001458 ORTHO05D006787 1.6e-15 87.4 227 33.5
SMO266G0075 Selaginella moellendorffii HOM05D001458 ORTHO05D006787 4.6e-15 85.9 151 39.1
vmacro20070 Vaccinium macrocarpon HOM05D001458 ORTHO05D006787 4.6e-15 85.9 201 35.3
Os03g0284800 Oryza sativa ssp. japonica HOM05D001458 ORTHO05D006787 1.0e-14 84.7 157 36.9
Zm00001eb013040 Zea mays HOM05D001458 ORTHO05D006787 1.3e-14 84.3 157 37.6
Gohir.A04G077200 Gossypium hirsutum HOM05D001458 ORTHO05D006787 2.3e-14 83.6 161 36.0
BcaC06g32012 Brassica carinata HOM05D001458 ORTHO05D006787 3.0e-14 83.2 111 44.1
MD08G1212100 Malus domestica HOM05D001458 ORTHO05D006787 8.6e-14 81.6 187 34.2
Mapoly0114s0011 Marchantia polymorpha HOM05D001458 ORTHO05D006787 1.1e-13 81.3 147 38.8
PRCOL_00005653 Prasinoderma coloniale HOM05D001458 ORTHO05D006787 5.6e-13 79.0 173 32.4
arahy.Tifrunner.gnm1.ann1.TU257H Arachis hypogaea HOM05D001458 ORTHO05D006787 9.5e-13 78.2 170 35.9
CBR_g20285 Chara braunii HOM05D001458 ORTHO05D006787 1.2e-12 77.8 111 42.3
CDE04G2715 Ceratophyllum demersum HOM05D001458 ORTHO05D006787 5.2e-11 72.4 112 40.2
Aqoxy1G00281 Aquilegia oxysepala HOM05D001458 ORTHO05D006787 1.2e-10 71.2 96 43.8
Lj8A178T76 Lonicera japonica HOM05D001458 ORTHO05D007170 5.8e-10 68.9 109 34.9
TWI39G0056 Tripterygium wilfordii HOM05D001458 ORTHO05D007170 6.4e-09 65.5 117 33.3
AagrBONN_evm.TU.Sc2ySwM_368.1624 Anthoceros agrestis HOM05D001458 ORTHO05D007170 1.1e-08 64.7 97 34.0
FvH4_3g06060 Fragaria vesca HOM05D001458 ORTHO05D006787 1.1e-08 64.7 137 29.9
MELO3C024924.2 Cucumis melo HOM05D001458 ORTHO05D007170 1.4e-08 64.3 109 38.5
RcHm_v2.0_Chr5g0010071 Rosa chinensis HOM05D001458 ORTHO05D006787 1.4e-08 64.3 93 37.6
FAN24G1719 Fragaria x ananassa HOM05D001458 ORTHO05D045816 2.4e-08 63.5 206 25.2
CANSAT11G0117 Cannabis sativa HOM05D001458 ORTHO05D007170 3.2e-08 63.2 109 36.7
Duzib170G0318 Durio zibethinus HOM05D001458 ORTHO05D007170 3.2e-08 63.2 109 37.6
RcHm_v2.0_Chr3g0447681 Rosa chinensis HOM05D001458 ORTHO05D006787 3.2e-08 63.2 120 33.3
TPR.G24521 Trifolium pratense HOM05D001458 ORTHO05D006787 3.2e-08 63.2 82 39.0
FAN11G2921 Fragaria x ananassa HOM05D001458 ORTHO05D007170 5.4e-08 62.4 118 33.1
Prupe.4G241800 Prunus persica HOM05D001458 ORTHO05D007170 5.4e-08 62.4 109 36.7
RcHm_v2.0_Chr5g0053841 Rosa chinensis HOM05D001458 ORTHO05D007170 7.1e-08 62.0 109 36.7
Haze_09810 Corylus avellana HOM05D001458 ORTHO05D007170 9.2e-08 61.6 109 34.9
RcHm_v2.0_Chr5g0062071 Rosa chinensis HOM05D001458 ORTHO05D029446 9.2e-08 61.6 100 34.0
Sed0010799 Sechium edule HOM05D001458 ORTHO05D007170 9.2e-08 61.6 109 36.7
Cfa020207 Carpinus fangiana HOM05D001458 ORTHO05D007170 1.2e-07 61.2 109 34.9
FvH4_2g33020 Fragaria vesca HOM05D001458 ORTHO05D045816 1.2e-07 61.2 206 25.2
Potri.001G366700 Populus trichocarpa HOM05D001458 ORTHO05D007170 1.2e-07 61.2 118 34.7
RcHm_v2.0_Chr2g0103111 Rosa chinensis HOM05D001458 ORTHO05D006787 1.2e-07 61.2 93 36.6
Aa31LG8G370 Aethionema arabicum HOM05D001458 ORTHO05D007170 1.6e-07 60.8 117 34.2
Sopen07g033650 Solanum pennellii HOM05D001458 ORTHO05D007170 1.6e-07 60.8 109 35.8
Medtr5g095090 Medicago truncatula HOM05D001458 ORTHO05D007170 2.1e-07 60.5 109 37.6
CsaV3_7G017270 Cucumis sativus L. HOM05D001458 ORTHO05D007170 2.7e-07 60.1 109 37.6
CsaV3_7G017280 Cucumis sativus L. HOM05D001458 ORTHO05D007170 2.7e-07 60.1 109 37.6
CsaV3_7G018280 Cucumis sativus L. HOM05D001458 ORTHO05D007170 2.7e-07 60.1 109 37.6
CsaV3_UNG200520 Cucumis sativus L. HOM05D001458 ORTHO05D007170 2.7e-07 60.1 109 37.6
CsaV3_UNG214460 Cucumis sativus L. HOM05D001458 ORTHO05D007170 2.7e-07 60.1 109 37.6
FAN16G1179 Fragaria x ananassa HOM05D001458 ORTHO05D007170 2.7e-07 60.1 106 34.9
CAN.G2569.1 Capsicum annuum HOM05D001458 ORTHO05D007170 3.5e-07 59.7 109 35.8
CAN.G337.9 Capsicum annuum HOM05D001458 ORTHO05D007170 3.5e-07 59.7 109 35.8
FvH4_3g29420 Fragaria vesca HOM05D001458 ORTHO05D007170 3.5e-07 59.7 112 33.0
Manes.15G061000 Manihot esculenta HOM05D001458 ORTHO05D007170 3.5e-07 59.7 109 37.6
Hund01905 Selenicereus undatus HOM05D001458 ORTHO05D007170 3.5e-07 59.7 102 33.3
unitig_747.g21640 Utricularia gibba HOM05D001458 ORTHO05D007170 3.5e-07 59.7 109 35.8
Migut.M01660 Erythranthe guttata HOM05D001458 ORTHO05D007170 4.6e-07 59.3 117 32.5
Glyma.02G299600 Glycine max HOM05D001458 ORTHO05D007170 4.6e-07 59.3 103 35.0
MD11G1201200 Malus domestica HOM05D001458 ORTHO05D007170 4.6e-07 59.3 109 36.7
Oeu005966.1 Olea europaea HOM05D001458 ORTHO05D007170 4.6e-07 59.3 119 34.5
FAN25G1628 Fragaria x ananassa HOM05D001458 ORTHO05D007170 6.0e-07 58.9 112 33.0
BraA01t04073Z Brassica rapa HOM05D001458 ORTHO05D007170 7.8e-07 58.5 117 35.0
Aqoxy1G04244 Aquilegia oxysepala HOM05D001458 ORTHO05D007170 1.7e-06 57.4 109 34.9
TPR.G31630 Trifolium pratense HOM05D001458 ORTHO05D008462 1.7e-06 57.4 85 41.2
Cc05_g14850 Coffea canephora HOM05D001458 ORTHO05D007170 2.3e-06 57.0 109 33.9
LjContig00081g0000365 Lotus japonicus HOM05D001458 ORTHO05D007170 2.3e-06 57.0 109 34.9
Psat4g050240 Pisum sativum HOM05D001458 ORTHO05D007170 2.3e-06 57.0 109 35.8
Psat2g008560 Pisum sativum HOM05D001458 ORTHO05D007170 3.0e-06 56.6 109 35.8
Os12g0622500 Oryza sativa ssp. japonica HOM05D001458 ORTHO05D006787 3.9e-06 56.2 118 38.1
SGA_v2.0_scaffold171G38881 Striga asiatica HOM05D003514 ORTHO05D004280 5.1e-06 55.8 116 32.8
Dinv40848 Davidia involucrata HOM05D001458 ORTHO05D007170 6.6e-06 55.5 169 29.0
Gohir.A01G090600 Gossypium hirsutum HOM05D001458 ORTHO05D007170 8.6e-06 55.1 112 36.6
MBI16_g22433_MAGBIO Magnolia biondii HOM05D001458 ORTHO05D007170 8.6e-06 55.1 115 33.0


User provided reference genes

Program Settings