Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 2.4e-144 515.4 245 100.0
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 1.5e-130 469.5 245 91.0
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 5.8e-130 467.6 244 90.6
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.1e-128 463.4 246 90.7
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.1e-128 463.4 246 90.7
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 1.3e-126 456.4 247 88.3
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 1.3e-124 449.9 243 87.2
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 3.8e-113 411.8 242 78.9
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 1.1e-112 410.2 245 79.6
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 3.2e-112 408.7 242 78.5
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 2.7e-111 405.6 241 80.1
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 3.5e-111 405.2 245 78.0
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 4.6e-111 404.8 241 79.3
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 3.4e-106 388.7 242 75.2
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 4.6e-103 378.3 242 75.2
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 2.5e-101 372.5 249 73.5
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 2.4e-91 339.3 185 88.1
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 5.1e-86 321.6 241 66.4
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 4.4e-85 318.5 241 63.5
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 7.4e-85 317.8 244 66.0
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 2.2e-84 316.2 241 62.7
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.8e-83 313.2 241 64.7
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 9.1e-83 310.8 241 63.9
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 1.5e-82 310.1 241 64.3
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 2.0e-82 309.7 238 63.9
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 5.9e-82 308.1 241 63.1
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.0e-81 307.4 241 63.9
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 1.0e-81 307.4 241 63.1
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 1.7e-81 306.6 241 62.7
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 2.2e-81 306.2 241 61.8
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 2.2e-81 306.2 241 61.0
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 3.8e-81 305.4 241 62.2
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 5.0e-81 305.1 241 62.2
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 5.0e-81 305.1 241 63.1
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.9e-80 303.1 241 63.1
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 3.2e-80 302.4 241 61.4
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 4.2e-80 302.0 242 61.6
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 4.2e-80 302.0 244 60.2
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 9.4e-80 300.8 241 61.4
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.2e-79 300.4 244 60.7
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 1.2e-79 300.4 241 61.4
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 2.1e-79 299.7 241 61.0
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 1.4e-78 297.0 241 60.6
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 2.3e-78 296.2 241 61.0
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 3.9e-78 295.4 241 61.0
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 3.9e-78 295.4 242 62.0
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 2.0e-77 293.1 241 59.8
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 2.6e-77 292.7 241 60.6
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.3e-77 292.4 242 59.5
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 4.4e-77 292.0 241 60.2
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 5.7e-77 291.6 241 58.5
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 1.3e-76 290.4 241 59.3
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 2.8e-76 289.3 241 59.8
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 4.8e-76 288.5 242 59.5
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 1.1e-75 287.3 254 57.9
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 5.3e-75 285.0 242 61.2
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 5.3e-75 285.0 244 58.6
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 5.3e-75 285.0 244 58.2
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 5.3e-75 285.0 242 58.3
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 9.1e-75 284.3 241 59.8
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 9.1e-75 284.3 241 58.5
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 1.6e-74 283.5 241 56.4
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.6e-74 283.5 241 56.4
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 2.0e-74 283.1 244 59.0
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 2.6e-74 282.7 245 58.4
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 2.6e-74 282.7 242 58.7
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 3.5e-74 282.3 241 56.8
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 7.7e-74 281.2 244 57.0
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 7.7e-74 281.2 244 58.6
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 1.0e-73 280.8 241 58.9
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 1.0e-73 280.8 241 59.3
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.3e-73 280.4 241 58.9
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.7e-73 280.0 245 57.1
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 2.9e-73 279.3 239 60.3
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 3.8e-73 278.9 242 58.3
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 3.8e-73 278.9 255 55.7
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 5.0e-73 278.5 244 57.8
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 6.5e-73 278.1 241 58.5
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 8.5e-73 277.7 241 58.5
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 1.1e-72 277.3 242 57.9
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.1e-72 277.3 245 58.4
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.1e-72 277.3 245 58.4
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.5e-72 276.9 245 56.7
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 2.5e-72 276.2 239 59.0
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.2e-72 275.8 241 57.3
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 4.2e-72 275.4 241 58.1
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 9.4e-72 274.2 242 57.9
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 1.6e-71 273.5 217 60.4
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 2.1e-71 273.1 244 57.0
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 6.1e-71 271.6 241 56.8
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.4e-70 270.4 241 56.8
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 4.0e-70 268.9 241 57.7
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 6.7e-70 268.1 243 57.2
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 8.8e-70 267.7 243 57.6
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 8.8e-70 267.7 241 57.3
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 4.4e-69 265.4 243 56.0
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 7.5e-69 264.6 245 56.3
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.7e-68 263.5 243 56.8
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 2.8e-68 262.7 242 54.5
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 2.8e-68 262.7 243 57.6
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 2.8e-68 262.7 243 56.0
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 2.8e-68 262.7 210 63.8
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 3.7e-68 262.3 242 55.4
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 3.7e-68 262.3 242 55.4
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 8.2e-68 261.2 243 56.0
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 1.1e-67 260.8 243 55.1
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 1.1e-67 260.8 243 56.0
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 1.1e-67 260.8 243 55.1
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 1.8e-67 260.0 243 55.6
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 2.4e-67 259.6 239 55.6
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 2.4e-67 259.6 236 54.7
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.1e-67 258.8 242 54.5
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 9.1e-67 257.7 242 55.0
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 1.2e-66 257.3 244 55.3
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 2.0e-66 256.5 242 55.4
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 2.0e-66 256.5 243 55.1
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 2.7e-66 256.1 242 53.3
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 2.7e-66 256.1 243 55.1
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 5.9e-66 255.0 241 54.8
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 1.0e-65 254.2 238 53.8
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 2.9e-65 252.7 243 55.1
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 2.9e-65 252.7 243 55.1
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 8.5e-65 251.1 212 58.5
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.2e-64 249.2 224 58.0
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 7.2e-64 248.1 239 53.1
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 9.4e-64 247.7 242 54.1
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 9.4e-64 247.7 242 52.1
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 9.4e-64 247.7 230 52.2
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 2.7e-63 246.1 241 54.8
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.6e-63 245.7 211 58.3
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.8e-62 243.4 245 52.2
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.3e-62 243.0 224 55.4
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 3.4e-61 239.2 187 59.4
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 4.4e-61 238.8 240 53.3
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 9.8e-61 237.7 241 52.3
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 1.7e-60 236.9 248 50.0
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.8e-60 236.1 241 51.9
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 2.8e-60 236.1 232 51.7
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.7e-60 235.7 211 56.9
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 3.7e-60 235.7 224 52.7
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 4.8e-60 235.3 249 50.6
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 6.3e-60 235.0 209 55.5
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 6.3e-60 235.0 232 50.0
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 1.8e-59 233.4 241 50.2
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 1.5e-56 223.8 244 47.5
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.9e-56 223.4 229 50.7
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 2.5e-56 223.0 244 49.2
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 2.1e-55 219.9 240 47.9
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 1.8e-54 216.9 244 48.4
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 1.8e-54 216.9 263 48.3
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 3.4e-53 212.6 243 49.4
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 2.2e-52 209.9 129 78.3
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 2.2e-52 209.9 161 64.6
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 7.8e-50 201.4 231 48.9
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.8e-49 199.1 157 62.4
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 1.2e-47 194.1 115 77.4
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 1.6e-47 193.7 244 45.5
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 8.0e-47 191.4 245 44.5
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.3e-46 189.9 173 54.3
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 8.9e-46 188.0 159 57.2
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 1.1e-43 181.0 266 38.7
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 5.4e-43 178.7 170 53.5
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 1.3e-41 174.1 147 61.9
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 6.2e-39 165.2 208 46.6
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 6.2e-39 165.2 267 36.0
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 6.8e-38 161.8 124 62.9
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 7.8e-34 148.3 120 61.7
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.3e-32 142.9 193 42.0
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 4.7e-31 139.0 100 66.0
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 3.7e-28 129.4 137 48.2
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 7.1e-27 125.2 168 39.9
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 2.1e-23 113.6 190 34.2
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.6e-23 112.8 114 52.6
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 4.9e-20 102.4 70 68.6
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 1.9e-19 100.5 130 46.2
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 1.9e-19 100.5 89 49.4
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.7e-18 96.7 99 51.5
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 8.7e-17 91.7 167 29.3
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 4.3e-16 89.4 105 51.4
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 9.6e-16 88.2 97 52.6
Medtr4g119190 Medicago truncatula HOM05D003786 ORTHO05D004375 3.4e-13 79.7 48 72.9
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 3.8e-12 76.3 86 50.0
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 8.4e-12 75.1 203 26.1
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 7.8e-10 68.6 51 60.8
Cfa023727 Carpinus fangiana HOM05D003786 ORTHO05D004375 5.1e-09 65.9 190 25.8


User provided reference genes

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