Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37262 Trifolium pratense HOM05D006093 ORTHO05D007652 8.4e-187 657.1 330 100.0
Lj3g0003829 Lotus japonicus HOM05D006093 ORTHO05D007652 7.2e-162 574.3 328 87.5
Medtr2g104100 Medicago truncatula HOM05D006093 ORTHO05D007652 2.3e-160 569.3 319 90.0
Ca_01048_v3 Cicer arietinum L. HOM05D006093 ORTHO05D007652 1.1e-157 560.5 354 80.2
Lalb_Chr24g0395421 Lupinus albus HOM05D006093 ORTHO05D007652 4.5e-156 555.1 315 88.6
Glyma.13G366800 Glycine max HOM05D006093 ORTHO05D007652 3.0e-152 542.3 329 83.6
VMungo1080G1109 Vigna mungo HOM05D006093 ORTHO05D007652 8.2e-150 534.3 326 82.8
arahy.Tifrunner.gnm1.ann1.5T1ZSX Arachis hypogaea HOM05D006093 ORTHO05D007652 1.0e-147 527.3 295 87.8
arahy.Tifrunner.gnm1.ann1.RDN84X Arachis hypogaea HOM05D006093 ORTHO05D007652 1.0e-147 527.3 295 87.8
Phvul.005G179300 Phaseolus vulgaris HOM05D006093 ORTHO05D007652 2.1e-145 519.6 327 81.7
Duzib235G0399 Durio zibethinus HOM05D006093 ORTHO05D007652 8.3e-142 507.7 329 76.9
COL.COLO4_11898 Corchorus olitorius HOM05D006093 ORTHO05D007652 1.1e-141 507.3 301 81.7
CSS0022367 Camellia sinensis var. sinensis HOM05D006093 ORTHO05D007652 2.4e-141 506.1 325 78.2
Gohir.D10G082500 Gossypium hirsutum HOM05D006093 ORTHO05D007652 1.7e-139 500.0 296 81.4
Thecc.06G031100 Theobroma cacao HOM05D006093 ORTHO05D007652 2.2e-139 499.6 297 81.1
Psat5g303120 Pisum sativum HOM05D006093 ORTHO05D007652 2.9e-139 499.2 376 72.3
Atru.chr1.2881 Acer truncatum HOM05D006093 ORTHO05D007652 4.2e-138 495.4 303 79.5
Ciclev10025737m.g Citrus clementina HOM05D006093 ORTHO05D007652 4.2e-138 495.4 327 76.1
Eucgr.F03905 Eucalyptus grandis HOM05D006093 ORTHO05D007652 3.7e-134 482.3 293 79.2
CiPaw.01G249800 Carya illinoinensis HOM05D006093 ORTHO05D007652 8.3e-134 481.1 326 73.3
Potri.003G031100 Populus trichocarpa HOM05D006093 ORTHO05D007652 2.4e-133 479.6 332 72.9
RcHm_v2.0_Chr2g0134861 Rosa chinensis HOM05D006093 ORTHO05D007652 2.4e-133 479.6 326 74.8
TAR626G1009 Trochodendron aralioides HOM05D006093 ORTHO05D007652 3.1e-133 479.2 297 78.8
Hma1.2p1_0017F.1_g011320 Hydrangea macrophylla HOM05D006093 ORTHO05D007652 5.4e-133 478.4 303 77.9
Carub.0001s4146 Capsella rubella HOM05D006093 ORTHO05D007652 7.0e-133 478.0 302 78.1
FAN14G2225 Fragaria x ananassa HOM05D006093 ORTHO05D007652 7.0e-133 478.0 326 73.6
Gorai.011G089400 Gossypium raimondii HOM05D006093 ORTHO05D007652 7.0e-133 478.0 352 69.0
Lj5A75T43 Lonicera japonica HOM05D006093 ORTHO05D007652 9.2e-133 477.6 322 73.9
MD17G1215000 Malus domestica HOM05D006093 ORTHO05D007652 9.2e-133 477.6 309 76.1
Manes.11G058700 Manihot esculenta HOM05D006093 ORTHO05D007652 2.0e-132 476.5 330 71.8
PGSC0003DMG400014146 Solanum tuberosum HOM05D006093 ORTHO05D007652 3.5e-132 475.7 289 80.3
FvH4_6g29401 Fragaria vesca HOM05D006093 ORTHO05D007652 4.5e-132 475.3 332 72.3
FAN09G4542 Fragaria x ananassa HOM05D006093 ORTHO05D007652 5.9e-132 474.9 332 72.0
PSO170G6797 Papaver somniferum HOM05D006093 ORTHO05D007652 1.7e-131 473.4 319 74.0
HanXRQChr02g0033451 Helianthus annuus HOM05D006093 ORTHO05D007652 2.3e-131 473.0 295 77.6
BcaC08g43998 Brassica carinata HOM05D006093 ORTHO05D007652 6.6e-131 471.5 301 75.7
Sp1g39050 Schrenkiella parvula HOM05D006093 ORTHO05D007652 8.6e-131 471.1 330 70.9
AT1G52500 Arabidopsis thaliana HOM05D006093 ORTHO05D007652 1.9e-130 469.9 302 76.2
BolC6t36581H Brassica oleracea HOM05D006093 ORTHO05D007652 4.3e-130 468.8 301 75.1
Migut.I00747 Erythranthe guttata HOM05D006093 ORTHO05D007652 5.6e-130 468.4 330 71.2
A05p18970 Brassica napus HOM05D006093 ORTHO05D007652 9.5e-130 467.6 299 76.3
BraA05t20794Z Brassica rapa HOM05D006093 ORTHO05D007652 9.5e-130 467.6 299 76.3
THA.LOC104818014 Tarenaya hassleriana HOM05D006093 ORTHO05D007652 9.5e-130 467.6 298 74.5
vmacro16879 Vaccinium macrocarpon HOM05D006093 ORTHO05D007652 1.2e-129 467.2 356 69.1
MSTRG.11153 Avicennia marina HOM05D006093 ORTHO05D007652 2.8e-129 466.1 310 75.5
Gohir.A10G068900 Gossypium hirsutum HOM05D006093 ORTHO05D007652 2.8e-129 466.1 302 76.8
CsaV3_4G001910 Cucumis sativus L. HOM05D006093 ORTHO05D007652 3.6e-129 465.7 313 71.6
BcaB02g10988 Brassica carinata HOM05D006093 ORTHO05D007652 6.1e-129 464.9 285 78.2
Nitab4.5_0010806g0010 Nicotiana tabacum HOM05D006093 ORTHO05D007652 6.1e-129 464.9 304 75.0
MBI15_g24195_MAGBIO Magnolia biondii HOM05D006093 ORTHO05D007652 1.0e-128 464.2 297 76.8
Thhalv10011553m.g Eutrema salsugineum HOM05D006093 ORTHO05D007652 1.4e-128 463.8 302 75.2
AUR62011503 Chenopodium quinoa HOM05D006093 ORTHO05D007652 1.8e-128 463.4 290 78.6
Solyc03g117510.4 Solanum lycopersicum HOM05D006093 ORTHO05D007652 1.8e-128 463.4 302 76.2
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 6.8e-128 461.5 320 72.8
QL05p032033 Quercus lobata HOM05D006093 ORTHO05D007652 6.8e-128 461.5 344 68.9
Sopen03g036410 Solanum pennellii HOM05D006093 ORTHO05D007652 6.8e-128 461.5 302 76.2
ATR0800G026 Amborella trichopoda HOM05D006093 ORTHO05D007652 1.2e-127 460.7 328 72.0
EL10Ac9g21886 Beta vulgaris HOM05D006093 ORTHO05D007652 2.0e-127 459.9 296 77.4
Sed0013008 Sechium edule HOM05D006093 ORTHO05D007652 4.4e-127 458.8 316 70.6
CANSAT56G0666 Cannabis sativa HOM05D006093 ORTHO05D007652 5.7e-127 458.4 328 69.8
Aa31LG10G2500 Aethionema arabicum HOM05D006093 ORTHO05D007652 9.8e-127 457.6 325 70.2
CDE05G1298 Ceratophyllum demersum HOM05D006093 ORTHO05D007652 9.8e-127 457.6 326 71.2
Cc04_g04560 Coffea canephora HOM05D006093 ORTHO05D007652 9.8e-127 457.6 285 77.5
Cpa.g.sc167.9 Carica papaya HOM05D006093 ORTHO05D007652 1.3e-126 457.2 267 80.9
AUR62016319 Chenopodium quinoa HOM05D006093 ORTHO05D007652 2.9e-126 456.1 358 67.6
TWI12G0620 Tripterygium wilfordii HOM05D006093 ORTHO05D007652 3.7e-126 455.7 326 70.9
FAN05G1370 Fragaria x ananassa HOM05D006093 ORTHO05D007652 2.3e-123 446.4 333 68.8
HPP92_003851 Vanilla planifolia HOM05D006093 ORTHO05D007652 5.6e-122 441.8 330 65.5
Rhsim12G0190000 Rhododendron simsii HOM05D006093 ORTHO05D007652 4.0e-120 435.6 340 66.2
CAN.G407.11 Capsicum annuum HOM05D006093 ORTHO05D007652 2.0e-119 433.3 326 69.0
DCAR_025523 Daucus carota HOM05D006093 ORTHO05D007652 2.6e-119 433.0 260 80.0
SalBow2G3638 Salvia bowleyana HOM05D006093 ORTHO05D007652 7.5e-119 431.4 340 66.2
Manes.04G110800 Manihot esculenta HOM05D006093 ORTHO05D007652 2.0e-116 423.3 303 71.0
Peaxi162Scf00553g00627 Petunia axillaris HOM05D006093 ORTHO05D007652 2.0e-116 423.3 356 63.5
ClCG07G012240 Citrullus lanatus HOM05D006093 ORTHO05D007652 1.7e-115 420.2 394 55.1
unitig_62.g23594 Utricularia gibba HOM05D006093 ORTHO05D007652 6.6e-115 418.3 373 58.4
Hund00502 Selenicereus undatus HOM05D006093 ORTHO05D007652 1.9e-114 416.8 260 77.3
Nn8g39568 Nelumbo nucifera HOM05D006093 ORTHO05D007652 9.5e-114 414.5 260 79.6
Os08g0304900 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 3.6e-113 412.5 309 65.7
Zm00001eb275260 Zea mays HOM05D006093 ORTHO05D007652 1.4e-112 410.6 328 63.1
Ah.01g020480 Amaranthus hybridus HOM05D006093 ORTHO05D007652 2.0e-111 406.8 330 65.8
Sabra03G0017500 Salix brachista HOM05D006093 ORTHO05D007652 1.3e-110 404.1 418 54.8
ECA247G0880 Erigeron canadensis HOM05D006093 ORTHO05D007652 1.7e-110 403.7 327 63.9
Os06g0643600 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 1.7e-110 403.7 335 60.9
GSVIVG01017379001 Vitis vinifera HOM05D006093 ORTHO05D007652 1.9e-109 400.2 243 78.6
Haze_16582 Corylus avellana HOM05D006093 ORTHO05D007652 4.6e-108 395.6 246 78.9
Lsat_1_v5_gn_1_34180 Lactuca sativa HOM05D006093 ORTHO05D007652 1.3e-107 394.0 331 61.9
MELO3C017842.2 Cucumis melo HOM05D006093 ORTHO05D007652 5.6e-106 388.7 356 56.7
SGA_v2.0_scaffold5G02719 Striga asiatica HOM05D006093 ORTHO05D007652 6.2e-105 385.2 322 62.4
PGR102G2220 Punica granatum HOM05D006093 ORTHO05D007652 2.3e-104 383.3 281 70.5
HanXRQChr02g0033461 Helianthus annuus HOM05D006093 ORTHO05D007652 1.7e-102 377.1 350 59.1
HanXRQChr02g0033471 Helianthus annuus HOM05D006093 ORTHO05D007652 9.2e-101 371.3 333 59.5
Prupe.3G090700 Prunus persica HOM05D006093 ORTHO05D007652 9.2e-101 371.3 221 81.9
Nitab4.5_0003072g0060 Nicotiana tabacum HOM05D006093 ORTHO05D007652 7.8e-100 368.2 324 61.4
AL1G60740 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 1.1e-98 364.4 222 78.4
Dinv30625 Davidia involucrata HOM05D006093 ORTHO05D007652 2.5e-98 363.2 288 65.6
CARHR042600 Cardamine hirsuta HOM05D006093 ORTHO05D007652 4.3e-98 362.5 222 77.9
Sc10g0008130 Simmondsia chinensis HOM05D006093 ORTHO05D007652 9.9e-95 351.3 214 79.4
Actinidia08791 Actinidia chinensis HOM05D006093 ORTHO05D007652 1.3e-94 350.9 248 73.0
Pp3c23_21520 Physcomitrium patens HOM05D006093 ORTHO05D007652 8.1e-89 331.6 328 52.4
Cfa001944 Carpinus fangiana HOM05D006093 ORTHO05D007652 3.1e-88 329.7 201 80.1
Pp3c8_24280 Physcomitrium patens HOM05D006093 ORTHO05D007652 3.2e-85 319.7 285 54.4
SHI11225 Sapria himalayana HOM05D006093 ORTHO05D007652 9.3e-85 318.2 328 52.1
Mapoly0015s0062 Marchantia polymorpha HOM05D006093 ORTHO05D007652 8.7e-83 311.6 327 49.8
SMO367G0330 Selaginella moellendorffii HOM05D006093 ORTHO05D007652 8.1e-81 305.1 251 61.4
Pp3c24_20180 Physcomitrium patens HOM05D006093 ORTHO05D007652 1.0e-75 288.1 332 47.3
Psat6g066000 Pisum sativum HOM05D006093 ORTHO05D007652 1.6e-73 280.8 184 78.3
PSO017G4202 Papaver somniferum HOM05D006093 ORTHO05D007652 1.5e-71 274.2 191 72.8
Cre10.g428433 Chlamydomonas reinhardtii HOM05D006093 ORTHO05D007652 2.1e-65 253.8 294 46.6
CBR_g884 Chara braunii HOM05D006093 ORTHO05D007652 4.8e-65 252.7 248 48.8
MCO15G481 Micromonas commoda HOM05D006093 ORTHO05D007652 1.0e-54 218.4 271 42.4
Cfa001945 Carpinus fangiana HOM05D006093 ORTHO05D007652 3.6e-52 209.9 329 45.6
GSVIVG01026354001 Vitis vinifera HOM05D006093 ORTHO05D007652 3.7e-49 199.9 113 83.2
Eucgr.L03570 Eucalyptus grandis HOM05D006093 ORTHO05D007652 2.4e-48 197.2 114 78.9
Cfa026683 Carpinus fangiana HOM05D006093 ORTHO05D007652 5.3e-48 196.1 352 33.8
Gohir.D10G074901 Gossypium hirsutum HOM05D006093 ORTHO05D007652 8.5e-46 188.7 121 76.0
AL7G45760 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 1.3e-33 148.3 101 74.3
SEGI_24777 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 3.7e-33 146.7 103 65.0
Actinidia08958 Actinidia chinensis HOM05D006093 ORTHO05D007652 3.8e-30 136.7 77 83.1
Dinv01702 Davidia involucrata HOM05D006093 ORTHO05D007652 3.2e-29 133.7 91 67.0
Oeu058023.3 Olea europaea HOM05D006093 ORTHO05D005440 1.6e-28 131.3 76 80.3
Dinv21460 Davidia involucrata HOM05D006093 ORTHO05D007652 3.0e-27 127.1 77 75.3
CARHR042620 Cardamine hirsuta HOM05D006093 ORTHO05D007652 6.3e-25 119.4 109 59.6
AL1G60750 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 2.0e-23 114.4 81 71.6
SEGI_39009 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 2.9e-22 110.5 100 58.0
Medtr3g118550 Medicago truncatula HOM05D006093 ORTHO05D007652 3.2e-21 107.1 134 50.7
SGA_v2.0_scaffold72G24067 Striga asiatica HOM05D006093 ORTHO05D007652 4.1e-16 90.1 99 48.5
Thecc.09G173900 Theobroma cacao HOM05D006093 ORTHO05D007652 5.4e-16 89.7 79 58.2
Sabra14G0094900 Salix brachista HOM05D006093 ORTHO05D007652 3.6e-12 77.0 54 64.8
Pp3c21_8660 Physcomitrium patens HOM05D016293 ORTHO05D018978 1.3e-06 58.5 88 35.2
PRCOL_00006677 Prasinoderma coloniale HOM05D016293 ORTHO05D018978 6.6e-06 56.2 202 26.7


User provided reference genes

Program Settings