Gene: Pp3c8_24280

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c8_24280
  • Transcript Identifier Pp3c8_24280V3.1
  • Gene Type Coding gene
  • Location Chr08 : 16938225-16942343 : positive

Gene Family Information

  • ID HOM05D006093
  • #Genes/#Species 130/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c8_24280V3.1
  • pacid 32965331
  • alias Phpat.008G088700
  • alias Phypa_144932
  • alias Pp1s221_62V6
  • uniprot A0A2K1K8K5

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006979
ISO
PLAZA Integrative Orthologyresponse to oxidative stress AT1G52500
GO:0006284
IBA
IEA
GOA Databasebase-excision repair
GO:0006284
IEA
InterProbase-excision repair
GO:0008152
IEA
GOA Databasemetabolic process
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006281
IEA
GOA DatabaseDNA repair

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016798
IEA
GOA Databasehydrolase activity, acting on glycosyl bonds
GO:0008534
ISO
PLAZA Homology (enrichment)oxidized purine nucleobase lesion DNA N-glycosylase activity HOM05D006093
GO:0019104
IBA
IEA
GOA DatabaseDNA N-glycosylase activity
GO:0019104
IEA
InterProDNA N-glycosylase activity
GO:0003906
IBA
IEA
GOA DatabaseDNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0003906
IEA
InterProDNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0016799
IEA
GOA Databasehydrolase activity, hydrolyzing N-glycosyl compounds
GO:0016799
IEA
InterProhydrolase activity, hydrolyzing N-glycosyl compounds
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003684
IEA
GOA Databasedamaged DNA binding
GO:0003684
IEA
InterProdamaged DNA binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0016829
IEA
GOA Databaselyase activity
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0140078
IEA
GOA Databaseclass I DNA-(apurinic or apyrimidinic site) endonuclease activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR017956 AT hook, DNA-binding motif
IPR035937 MutM-like, N-terminal
IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding
IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain
IPR010979 Ribosomal protein S13-like, H2TH
Mapman id Description
14.5.1 DNA damage response.base excision repair (BER).formamidopyrimidine-DNA glycosylase (FPG1)