Gene: Cfa001944

General Information

Structural Information

Species Carpinus fangiana
Gene Identifier Cfa001944
Transcript Identifier Cfa001944.t1
Gene Type Coding gene
Location Cfa01 : 24077179-24095555 : positive

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D006093
#Genes/#Species 130/97
Phylogenetic origin

ID ORTHO05D007652
#Genes/#Species 128/96
Phylogenetic origin

Gene Duplication Information

Tandem Duplication Tandem duplicate

Labels

Identifiers

tid Cfa001944.t1

Descriptions

Ortholog descriptions

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0045927	IEA	InterPro	positive regulation of growth
GO:0006284	IEA	InterPro	base-excision repair
GO:0006281	ISO	PLAZA Integrative Orthology	DNA repair	AT1G52500
GO:0006979	ISO	PLAZA Integrative Orthology	response to oxidative stress	AT1G52500

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003684	IEA	InterPro	damaged DNA binding
GO:0003906	IEA	InterPro	DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0008270	IEA	InterPro	zinc ion binding
GO:0016799	IEA	InterPro	hydrolase activity, hydrolyzing N-glycosyl compounds
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0019104	ISO	PLAZA Integrative Orthology	DNA N-glycosylase activity	AT1G52500
GO:0008534	ISO	PLAZA Homology (enrichment)	oxidized purine nucleobase lesion DNA N-glycosylase activity	HOM05D006093

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR021864	Domain of unknown function DUF3475
IPR035937	MutM-like, N-terminal
IPR015886	DNA glycosylase/AP lyase, H2TH DNA-binding
IPR010979	Ribosomal protein S13-like, H2TH

Mapman id	Description
14.5.1	DNA damage response.base excision repair (BER).formamidopyrimidine-DNA glycosylase (FPG1)