Gene: Nitab4.5_0003072g0060

General Information

Structural Information

  • Species Nicotiana tabacum
  • Gene Identifier Nitab4.5_0003072g0060
  • Transcript Identifier Nitab4.5_0003072g0060.1
  • Gene Type Coding gene
  • Location Nitab4.5_0003072 : 181619-186215 : negative

Gene Family Information

  • ID HOM05D006093
  • #Genes/#Species 130/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Nitab4.5_0003072g0060.1
  • SR1-identifier Nta06g24730.2

Descriptions

  • Description DNA glycosylase/AP lyase, catalytic domain, Ribosomal protein S13-like, H2TH, DNA glycosylase/AP lyase, H2TH DNA-binding
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006284
IEA
InterProbase-excision repair
GO:0006281
ISO
PLAZA Integrative OrthologyDNA repair AT1G52500
GO:0006979
ISO
PLAZA Integrative Orthologyresponse to oxidative stress AT1G52500

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003684
IEA
InterProdamaged DNA binding
GO:0003906
IEA
InterProDNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0008270
IEA
InterProzinc ion binding
GO:0016799
IEA
InterProhydrolase activity, hydrolyzing N-glycosyl compounds
GO:0003676
IEA
InterPronucleic acid binding
GO:0019104
IEA
InterProDNA N-glycosylase activity
GO:0008534
ISO
PLAZA Homology (enrichment)oxidized purine nucleobase lesion DNA N-glycosylase activity HOM05D006093

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding
IPR010979 Ribosomal protein S13-like, H2TH
IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain
IPR035937 MutM-like, N-terminal
Mapman id Description
14.5.1 DNA damage response.base excision repair (BER).formamidopyrimidine-DNA glycosylase (FPG1)