Gene: COL.COLO4_11898
General Information
Structural Information
- Species Corchorus olitorius
- Gene Identifier COL.COLO4_11898
- Transcript Identifier COL.rna10690
- Gene Type Coding gene
- Location AWUE01014777.1 : 2056-6693 : positive
Gene Family Information
- ID HOM05D006093
- #Genes/#Species 130/97
- Phylogenetic origin
- ID ORTHO05D007652
- #Genes/#Species 128/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid rna10690
- GenBank OMP01389.1
- id gene11870
- gene_name COLO4_11898
- uniprot A0A1R3K2S5
Descriptions
- Description DNA glycosylase/AP lyase
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006284 | IEA | GOA Database | base-excision repair | |
| GO:0006284 | IEA | InterPro | base-excision repair | |
| GO:0006979 | ISO | PLAZA Integrative Orthology | response to oxidative stress | AT1G52500 |
| GO:0006281 | IEA | GOA Database | DNA repair | |
| GO:0006281 | IEA | InterPro | DNA repair | |
| GO:0008152 | IEA | GOA Database | metabolic process | |
| GO:0006974 | IEA | GOA Database | cellular response to DNA damage stimulus |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008534 | IEA | GOA Database | oxidized purine nucleobase lesion DNA N-glycosylase activity | |
| GO:0008534 | IEA | InterPro | oxidized purine nucleobase lesion DNA N-glycosylase activity | |
| GO:0016799 | IEA | GOA Database | hydrolase activity, hydrolyzing N-glycosyl compounds | |
| GO:0016799 | IEA | InterPro | hydrolase activity, hydrolyzing N-glycosyl compounds | |
| GO:0003684 | IEA | GOA Database | damaged DNA binding | |
| GO:0003684 | IEA | InterPro | damaged DNA binding | |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0019104 | IEA | GOA Database | DNA N-glycosylase activity | |
| GO:0019104 | IEA | InterPro | DNA N-glycosylase activity | |
| GO:0008270 | IEA | GOA Database | zinc ion binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0003906 | IEA | GOA Database | DNA-(apurinic or apyrimidinic site) endonuclease activity | |
| GO:0003906 | IEA | InterPro | DNA-(apurinic or apyrimidinic site) endonuclease activity | |
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0016798 | IEA | GOA Database | hydrolase activity, acting on glycosyl bonds | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0016829 | IEA | GOA Database | lyase activity | |
| GO:0003824 | IEA | GOA Database | catalytic activity |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 14.5.1 | DNA damage response.base excision repair (BER).formamidopyrimidine-DNA glycosylase (FPG1) |