Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36261 Trifolium pratense HOM05D001934 ORTHO05D002139 4.8e-24 113.6 55 100.0
TPR.G36772 Trifolium pratense HOM05D001934 ORTHO05D002139 1.3e-16 89.0 51 88.2
Medtr4g057345 Medicago truncatula HOM05D001934 ORTHO05D002139 3.7e-16 87.4 51 86.3
Medtr4g057340 Medicago truncatula HOM05D001934 ORTHO05D002139 1.4e-15 85.5 51 84.3
Psat7g191720 Pisum sativum HOM05D001934 ORTHO05D002139 1.8e-15 85.1 51 84.3
ClCG02G021550 Citrullus lanatus HOM05D001934 ORTHO05D002139 2.4e-15 84.7 51 82.4
Lalb_Chr19g0136941 Lupinus albus HOM05D001934 ORTHO05D002139 2.4e-15 84.7 51 82.4
Lj3g0025418 Lotus japonicus HOM05D001934 ORTHO05D002139 4.0e-15 84.0 51 80.4
MELO3C026949.2 Cucumis melo HOM05D001934 ORTHO05D002139 5.3e-15 83.6 51 82.4
CsaV3_6G014300 Cucumis sativus L. HOM05D001934 ORTHO05D002139 5.3e-15 83.6 51 82.4
TPR.G36794 Trifolium pratense HOM05D001934 ORTHO05D002139 5.3e-15 83.6 43 95.3
Ca_19318_v3 Cicer arietinum L. HOM05D001934 ORTHO05D002139 6.9e-15 83.2 51 82.4
Phvul.011G085900 Phaseolus vulgaris HOM05D001934 ORTHO05D002139 9.0e-15 82.8 51 80.4
VMungo1127G0172 Vigna mungo HOM05D001934 ORTHO05D002139 9.0e-15 82.8 51 80.4
Potri.009G005900 Populus trichocarpa HOM05D001934 ORTHO05D002139 1.2e-14 82.4 51 78.4
Cc01_g10340 Coffea canephora HOM05D001934 ORTHO05D002139 2.0e-14 81.6 51 80.4
RcHm_v2.0_Chr5g0056931 Rosa chinensis HOM05D001934 ORTHO05D002139 2.0e-14 81.6 51 78.4
Glyma.12G080900 Glycine max HOM05D001934 ORTHO05D002139 2.6e-14 81.3 51 78.4
Prupe.6G112300 Prunus persica HOM05D001934 ORTHO05D002139 2.6e-14 81.3 51 78.4
QL01p015243 Quercus lobata HOM05D001934 ORTHO05D002139 2.6e-14 81.3 51 80.4
unitig_22.g5652 Utricularia gibba HOM05D001934 ORTHO05D002139 2.6e-14 81.3 51 80.4
CANSAT54G0170 Cannabis sativa HOM05D001934 ORTHO05D002139 3.4e-14 80.9 51 80.4
Dinv16217 Davidia involucrata HOM05D001934 ORTHO05D002139 3.4e-14 80.9 51 80.4
MD03G1127000 Malus domestica HOM05D001934 ORTHO05D002139 3.4e-14 80.9 51 80.4
Sed0019273 Sechium edule HOM05D001934 ORTHO05D002139 4.5e-14 80.5 51 80.4
Gohir.A03G029300 Gossypium hirsutum HOM05D001934 ORTHO05D002139 5.8e-14 80.1 51 78.4
Oeu007739.1 Olea europaea HOM05D001934 ORTHO05D002139 5.8e-14 80.1 51 78.4
Sabra09G0003200 Salix brachista HOM05D001934 ORTHO05D002139 5.8e-14 80.1 51 76.5
SalBow3G0225 Salvia bowleyana HOM05D001934 ORTHO05D002139 5.8e-14 80.1 51 78.4
SGA_v2.0_scaffold442G51676 Striga asiatica HOM05D001934 ORTHO05D002139 5.8e-14 80.1 51 78.4
GSVIVG01031470001 Vitis vinifera HOM05D001934 ORTHO05D002139 5.8e-14 80.1 51 78.4
CSS0030578 Camellia sinensis var. sinensis HOM05D001934 ORTHO05D002139 7.6e-14 79.7 51 78.4
CSS0042491 Camellia sinensis var. sinensis HOM05D001934 ORTHO05D002139 7.6e-14 79.7 51 78.4
Ca_04368_v3 Cicer arietinum L. HOM05D001934 ORTHO05D002139 7.6e-14 79.7 43 88.4
ECA248G1944 Erigeron canadensis HOM05D001934 ORTHO05D002139 7.6e-14 79.7 49 79.6
Migut.N02546 Erythranthe guttata HOM05D001934 ORTHO05D002139 7.6e-14 79.7 51 78.4
Hma1.2p1_0779F.1_g216700 Hydrangea macrophylla HOM05D001934 ORTHO05D002139 7.6e-14 79.7 51 78.4
Phvul.005G021200 Phaseolus vulgaris HOM05D001934 ORTHO05D002139 7.6e-14 79.7 51 78.4
vmacro03256 Vaccinium macrocarpon HOM05D001934 ORTHO05D002139 7.6e-14 79.7 51 76.5
HPP92_022658 Vanilla planifolia HOM05D001934 ORTHO05D002139 7.6e-14 79.7 51 76.5
CiPaw.13G123200 Carya illinoinensis HOM05D001934 ORTHO05D002139 1.0e-13 79.3 51 78.4
Psat1g136680 Pisum sativum HOM05D001934 ORTHO05D002139 1.0e-13 79.3 43 93.0
Rhsim13G0100300 Rhododendron simsii HOM05D001934 ORTHO05D002139 1.0e-13 79.3 51 76.5
TWI75G1147 Tripterygium wilfordii HOM05D001934 ORTHO05D002139 1.0e-13 79.3 48 83.3
HanXRQChr11g0345941 Helianthus annuus HOM05D001934 ORTHO05D002139 1.3e-13 79.0 51 76.5
Cfa010294 Carpinus fangiana HOM05D001934 ORTHO05D002139 1.7e-13 78.6 51 76.5
Gohir.D03G139300 Gossypium hirsutum HOM05D001934 ORTHO05D002139 1.7e-13 78.6 51 76.5
Gorai.003G146000 Gossypium raimondii HOM05D001934 ORTHO05D002139 1.7e-13 78.6 51 76.5
HanXRQChr01g0019601 Helianthus annuus HOM05D001934 ORTHO05D002139 1.7e-13 78.6 51 76.5
Manes.11G152000 Manihot esculenta HOM05D001934 ORTHO05D002139 1.7e-13 78.6 51 76.5
Nitab4.5_0000329g0030 Nicotiana tabacum HOM05D001934 ORTHO05D002139 1.7e-13 78.6 51 78.4
Nitab4.5_0004414g0010 Nicotiana tabacum HOM05D001934 ORTHO05D002139 1.7e-13 78.6 51 78.4
Solyc11g066370.2 Solanum lycopersicum HOM05D001934 ORTHO05D002139 1.7e-13 78.6 51 78.4
Sopen11g026120 Solanum pennellii HOM05D001934 ORTHO05D002139 1.7e-13 78.6 51 78.4
CAN.G546.43 Capsicum annuum HOM05D001934 ORTHO05D002139 2.2e-13 78.2 51 78.4
DCAR_018768 Daucus carota HOM05D001934 ORTHO05D002139 2.9e-13 77.8 51 78.4
Dinv29375 Davidia involucrata HOM05D001934 ORTHO05D002139 2.9e-13 77.8 51 74.5
MD11G1147600 Malus domestica HOM05D001934 ORTHO05D002139 2.9e-13 77.8 51 76.5
Peaxi162Scf01492g00010 Petunia axillaris HOM05D001934 ORTHO05D002139 2.9e-13 77.8 51 76.5
MSTRG.17761 Avicennia marina HOM05D001934 ORTHO05D002139 3.8e-13 77.4 51 76.5
Cpa.g.sc1.8 Carica papaya HOM05D001934 ORTHO05D002139 3.8e-13 77.4 51 76.5
COL.COLO4_11104 Corchorus olitorius HOM05D001934 ORTHO05D002139 3.8e-13 77.4 51 74.5
Haze_23710 Corylus avellana HOM05D001934 ORTHO05D002139 3.8e-13 77.4 59 67.8
Nn6g35237 Nelumbo nucifera HOM05D001934 ORTHO05D002139 3.8e-13 77.4 51 72.5
Oeu040437.1 Olea europaea HOM05D001934 ORTHO05D002139 3.8e-13 77.4 51 76.5
Thecc.09G350700 Theobroma cacao HOM05D001934 ORTHO05D002139 3.8e-13 77.4 51 74.5
Actinidia24144 Actinidia chinensis HOM05D001934 ORTHO05D002139 5.0e-13 77.0 51 74.5
Aqoxy1G01108 Aquilegia oxysepala HOM05D001934 ORTHO05D002139 5.0e-13 77.0 48 79.2
FvH4_3g30730 Fragaria vesca HOM05D001934 ORTHO05D002139 5.0e-13 77.0 51 74.5
FAN11G3232 Fragaria x ananassa HOM05D001934 ORTHO05D002139 5.0e-13 77.0 51 74.5
FAN25G1126 Fragaria x ananassa HOM05D001934 ORTHO05D002139 5.0e-13 77.0 51 72.5
Glyma.11G193100 Glycine max HOM05D001934 ORTHO05D002139 5.0e-13 77.0 51 72.5
Atru.chr3.3525 Acer truncatum HOM05D001934 ORTHO05D002139 6.5e-13 76.6 51 74.5
Duzib150G0588 Durio zibethinus HOM05D001934 ORTHO05D002139 6.5e-13 76.6 51 72.5
Eucgr.J00386 Eucalyptus grandis HOM05D001934 ORTHO05D002139 6.5e-13 76.6 51 74.5
FAN21G1990 Fragaria x ananassa HOM05D001934 ORTHO05D002139 6.5e-13 76.6 51 72.5
Ciclev10027871m.g Citrus clementina HOM05D001934 ORTHO05D002139 8.4e-13 76.3 51 74.5
Lsat_1_v5_gn_1_64561 Lactuca sativa HOM05D001934 ORTHO05D002139 8.4e-13 76.3 43 86.0
PGR119G0273 Punica granatum HOM05D001934 ORTHO05D002139 8.4e-13 76.3 51 74.5
Lj2A1009G37 Lonicera japonica HOM05D001934 ORTHO05D002139 1.1e-12 75.9 51 74.5
FAN16G0005 Fragaria x ananassa HOM05D001934 ORTHO05D002139 1.4e-12 75.5 50 74.0
AL1G18510 Arabidopsis lyrata HOM05D001934 ORTHO05D002139 1.9e-12 75.1 51 68.6
AT1G08130 Arabidopsis thaliana HOM05D001934 ORTHO05D002139 1.9e-12 75.1 51 68.6
CDE08G0024 Ceratophyllum demersum HOM05D001934 ORTHO05D002139 1.9e-12 75.1 48 75.0
Sc06g0010820 Simmondsia chinensis HOM05D001934 ORTHO05D002139 1.9e-12 75.1 51 74.5
PSO339G0390 Papaver somniferum HOM05D001934 ORTHO05D002139 2.5e-12 74.7 43 83.7
vmacro17296 Vaccinium macrocarpon HOM05D001934 ORTHO05D002139 2.5e-12 74.7 51 70.6
arahy.Tifrunner.gnm1.ann1.489L6Z Arachis hypogaea HOM05D001934 ORTHO05D002139 3.2e-12 74.3 51 72.5
arahy.Tifrunner.gnm1.ann1.CF9NWX Arachis hypogaea HOM05D001934 ORTHO05D002139 3.2e-12 74.3 51 72.5
Os10g0489200 Oryza sativa ssp. japonica HOM05D001934 ORTHO05D002139 3.2e-12 74.3 48 75.0
arahy.Tifrunner.gnm1.ann1.Z70S0B Arachis hypogaea HOM05D001934 ORTHO05D002139 4.2e-12 73.9 51 72.5
BcaB07g34055 Brassica carinata HOM05D001934 ORTHO05D002139 4.2e-12 73.9 51 68.6
BcaC05g24731 Brassica carinata HOM05D001934 ORTHO05D002139 4.2e-12 73.9 51 68.6
BcaC07g41965 Brassica carinata HOM05D001934 ORTHO05D002139 4.2e-12 73.9 51 68.6
A06p05190 Brassica napus HOM05D001934 ORTHO05D002139 4.2e-12 73.9 51 68.6
A09p66010 Brassica napus HOM05D001934 ORTHO05D002139 4.2e-12 73.9 51 68.6
C05p06240 Brassica napus HOM05D001934 ORTHO05D002139 4.2e-12 73.9 51 68.6
C08p50170 Brassica napus HOM05D001934 ORTHO05D002139 4.2e-12 73.9 51 68.6
BolC5t29379H Brassica oleracea HOM05D001934 ORTHO05D002139 4.2e-12 73.9 51 68.6
BolC8t52546H Brassica oleracea HOM05D001934 ORTHO05D002139 4.2e-12 73.9 51 68.6
BraA06t23726Z Brassica rapa HOM05D001934 ORTHO05D002139 4.2e-12 73.9 51 68.6
Peaxi162Scf00420g00341 Petunia axillaris HOM05D001934 ORTHO05D002139 4.2e-12 73.9 49 75.5
Sp1g06770 Schrenkiella parvula HOM05D001934 ORTHO05D002139 4.2e-12 73.9 51 68.6
Aa31sc759G20 Aethionema arabicum HOM05D001934 ORTHO05D002139 5.5e-12 73.6 51 68.6
Carub.0001s0748 Capsella rubella HOM05D001934 ORTHO05D002139 5.5e-12 73.6 51 66.7
Migut.D00893 Erythranthe guttata HOM05D001934 ORTHO05D002139 5.5e-12 73.6 51 74.5
SMO134G0141 Selaginella moellendorffii HOM05D001934 ORTHO05D002139 5.5e-12 73.6 48 72.9
Thhalv10006843m.g Eutrema salsugineum HOM05D001934 ORTHO05D002139 7.1e-12 73.2 51 68.6
Peaxi162Scf00420g00330 Petunia axillaris HOM05D001934 ORTHO05D002139 7.1e-12 73.2 49 75.5
Zm00001eb045200 Zea mays HOM05D001934 ORTHO05D002139 7.1e-12 73.2 48 72.9
arahy.Tifrunner.gnm1.ann1.E6T32I Arachis hypogaea HOM05D001934 ORTHO05D002139 1.2e-11 72.4 51 70.6
CARHR007940 Cardamine hirsuta HOM05D001934 ORTHO05D002139 1.2e-11 72.4 51 66.7
AUR62029176 Chenopodium quinoa HOM05D001934 ORTHO05D002139 2.1e-11 71.6 51 68.6
Hund08363 Selenicereus undatus HOM05D001934 ORTHO05D002139 2.7e-11 71.2 51 68.6
EL10Ac9g22613 Beta vulgaris HOM05D001934 ORTHO05D002139 4.6e-11 70.5 51 68.6
BraA09t41940Z Brassica rapa HOM05D001934 ORTHO05D002139 4.6e-11 70.5 51 64.7
AUR62014959 Chenopodium quinoa HOM05D001934 ORTHO05D002139 4.6e-11 70.5 46 73.9
TPR.G8175 Trifolium pratense HOM05D001934 ORTHO05D002139 6.1e-11 70.1 41 80.5
Medtr8g468400 Medicago truncatula HOM05D001934 ORTHO05D002139 7.9e-11 69.7 51 68.6
Peaxi162Scf03009g00002 Petunia axillaris HOM05D001934 ORTHO05D002139 7.9e-11 69.7 40 85.0
TAR625G1443 Trochodendron aralioides HOM05D001934 ORTHO05D002139 7.9e-11 69.7 51 66.7
TAR636G2490 Trochodendron aralioides HOM05D001934 ORTHO05D002139 1.0e-10 69.3 51 66.7
FvH4_3g30740 Fragaria vesca HOM05D001934 ORTHO05D002139 1.8e-10 68.6 51 66.7
AagrBONN_evm.TU.Sc2ySwM_362.157 Anthoceros agrestis HOM05D001934 ORTHO05D002139 3.9e-10 67.4 43 74.4
SEGI_21231 Sequoiadendron giganteum HOM05D001934 ORTHO05D002139 6.7e-10 66.6 43 72.1
Pp3c13_20200 Physcomitrium patens HOM05D001934 ORTHO05D002139 2.5e-09 64.7 48 60.4
Pp3c13_20209 Physcomitrium patens HOM05D001934 ORTHO05D002139 2.5e-09 64.7 48 60.4
Aqoxy1G02004 Aquilegia oxysepala HOM05D001934 ORTHO05D002139 3.3e-09 64.3 43 69.8
Ah.01g003310 Amaranthus hybridus HOM05D001934 ORTHO05D002139 7.4e-09 63.2 51 62.7
Thhalv10028321m.g Eutrema salsugineum HOM05D001934 ORTHO05D002139 1.6e-08 62.0 51 56.9
Mapoly0033s0129 Marchantia polymorpha HOM05D001934 ORTHO05D002139 1.6e-08 62.0 46 63.0
CARHR225720 Cardamine hirsuta HOM05D001934 ORTHO05D002139 2.8e-08 61.2 50 58.0
AT1G49250 Arabidopsis thaliana HOM05D001934 ORTHO05D002139 3.7e-08 60.8 43 65.1
SHI06224 Sapria himalayana HOM05D001934 ORTHO05D002139 1.4e-07 58.9 49 65.3
FAN11G3348 Fragaria x ananassa HOM05D001934 ORTHO05D002139 1.8e-07 58.5 46 63.0
CBR_g45434 Chara braunii HOM05D001934 ORTHO05D002139 2.4e-07 58.2 43 65.1
ATR0329G039 Amborella trichopoda HOM05D001934 ORTHO05D002139 3.1e-07 57.8 43 62.8
Ciclev10017985m.g Citrus clementina HOM05D001934 ORTHO05D002139 3.1e-07 57.8 51 58.8


User provided reference genes

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