Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 5.6e-206 720.7 359 100.0
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 1.1e-198 696.4 359 95.8
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 1.4e-193 679.5 360 93.6
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 5.1e-191 671.0 360 93.1
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 3.6e-181 638.3 361 87.8
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 1.4e-180 636.3 360 87.5
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 3.8e-178 628.2 360 85.6
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 1.0e-175 620.2 360 85.3
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 3.0e-175 618.6 360 85.0
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 5.6e-174 614.4 360 84.2
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 2.4e-172 609.0 362 83.1
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 6.9e-172 607.4 362 82.9
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 1.1e-169 600.1 362 82.9
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 3.1e-164 582.0 360 80.3
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 8.7e-159 563.9 360 78.9
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 9.3e-153 543.9 302 90.4
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 6.5e-138 494.6 360 68.1
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 5.5e-137 491.5 360 68.1
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 5.5e-137 491.5 371 66.0
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 1.6e-136 490.0 360 66.7
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 3.6e-136 488.8 360 67.2
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 6.1e-136 488.0 360 66.9
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 6.1e-136 488.0 361 67.6
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 1.5e-134 483.4 371 65.8
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 2.0e-134 483.0 360 66.4
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 3.3e-134 482.3 370 64.6
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 3.3e-134 482.3 361 66.2
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 9.7e-134 480.7 371 65.2
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 9.7e-134 480.7 360 67.5
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 2.2e-133 479.6 360 66.9
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 2.2e-133 479.6 364 65.9
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 4.8e-133 478.4 360 66.1
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 4.8e-133 478.4 372 65.6
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 4.8e-133 478.4 360 65.3
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 4.8e-133 478.4 362 66.6
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.1e-132 477.2 375 64.8
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 2.4e-132 476.1 360 65.6
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 2.4e-132 476.1 368 66.3
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 3.1e-132 475.7 363 64.7
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 3.1e-132 475.7 381 63.3
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 3.1e-132 475.7 360 65.8
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 4.1e-132 475.3 362 65.7
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 5.3e-132 474.9 360 66.7
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 5.3e-132 474.9 367 65.1
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 5.3e-132 474.9 374 65.0
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 7.0e-132 474.6 360 65.3
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 9.1e-132 474.2 371 64.4
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 9.1e-132 474.2 383 63.7
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 2.6e-131 472.6 367 64.9
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 2.6e-131 472.6 375 64.0
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 3.5e-131 472.2 368 66.3
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 4.5e-131 471.9 368 66.3
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 4.5e-131 471.9 368 63.9
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 1.3e-130 470.3 368 63.9
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.7e-130 469.9 375 64.5
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 2.2e-130 469.5 368 65.8
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 2.2e-130 469.5 368 65.8
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 2.2e-130 469.5 375 63.2
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 2.9e-130 469.2 367 65.4
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 2.9e-130 469.2 361 65.1
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 5.0e-130 468.4 361 65.7
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 2.5e-129 466.1 360 64.4
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 3.2e-129 465.7 367 64.9
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 9.4e-129 464.2 369 64.0
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 2.1e-128 463.0 361 63.4
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 2.1e-128 463.0 367 65.1
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 2.1e-128 463.0 367 64.6
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 2.7e-128 462.6 366 64.5
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 3.6e-128 462.2 372 62.6
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 4.7e-128 461.8 367 64.3
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 6.1e-128 461.5 367 64.6
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 6.1e-128 461.5 367 64.6
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 6.1e-128 461.5 366 64.8
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 6.1e-128 461.5 370 62.2
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 8.0e-128 461.1 372 62.1
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 1.0e-127 460.7 361 63.4
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 1.8e-127 459.9 366 64.5
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 5.2e-127 458.4 372 61.8
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 8.8e-127 457.6 373 61.7
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 1.5e-126 456.8 374 62.0
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 2.6e-126 456.1 367 63.8
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 2.6e-126 456.1 380 61.3
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 2.6e-126 456.1 374 61.8
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 3.3e-126 455.7 367 63.5
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 5.7e-126 454.9 362 64.1
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 7.4e-126 454.5 364 64.0
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 2.8e-125 452.6 380 62.4
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 3.7e-125 452.2 362 64.9
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 3.7e-125 452.2 359 63.8
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 4.8e-125 451.8 383 61.4
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 6.3e-125 451.4 362 64.4
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 8.2e-125 451.1 363 63.6
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 1.1e-124 450.7 362 64.1
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 1.6e-123 446.8 392 61.5
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 2.0e-123 446.4 361 63.4
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 3.5e-123 445.7 383 59.8
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 5.9e-123 444.9 384 60.4
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 5.9e-123 444.9 383 59.5
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 1.7e-122 443.4 364 62.4
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.5e-121 440.3 383 60.1
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 3.2e-121 439.1 356 62.1
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 4.2e-121 438.7 369 61.8
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 2.7e-120 436.0 369 61.5
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 1.5e-118 430.3 360 61.1
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 1.5e-118 430.3 359 60.4
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 4.8e-117 425.2 354 61.6
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 3.5e-115 419.1 306 68.0
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 2.1e-112 409.8 362 58.3
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 4.0e-111 405.6 380 56.3
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 6.8e-111 404.8 314 64.6
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 9.1e-108 394.4 356 56.7
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 2.5e-105 386.3 353 59.2
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 2.3e-103 379.8 343 58.6
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 8.9e-103 377.9 292 67.8
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 2.2e-101 373.2 315 61.9
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 7.0e-100 368.2 388 50.3
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 4.5e-99 365.5 360 54.4
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.6e-96 357.1 314 59.2
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 1.6e-96 357.1 353 54.7
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 5.4e-92 342.0 371 50.1
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 1.2e-91 340.9 358 52.0
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 1.1e-87 327.8 276 60.1
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 6.4e-77 292.0 274 54.4
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.2e-75 287.7 197 75.1
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 2.7e-67 260.0 160 81.2
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 4.3e-65 252.7 167 78.4
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 2.1e-64 250.4 251 50.6
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 4.4e-62 242.7 367 39.2
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 9.6e-57 224.9 251 50.6
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 1.3e-48 198.0 181 52.5
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 1.6e-48 197.6 329 35.3
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 8.1e-48 195.3 227 49.8
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 5.3e-47 192.6 215 48.4
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.2e-45 187.2 159 60.4
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.5e-41 174.5 197 48.2
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 8.2e-40 168.7 197 47.7
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 7.4e-33 145.6 133 60.2
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 1.6e-32 144.4 133 59.4
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 3.7e-32 143.3 229 38.4
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 1.7e-29 134.4 159 45.3
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 2.9e-29 133.7 121 58.7
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 8.5e-29 132.1 81 81.5
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.3e-21 108.2 83 63.9
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 3.9e-18 96.7 112 49.1
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 5.3e-15 86.3 51 76.5
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 5.3e-15 86.3 51 76.5
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 7.7e-14 82.4 97 40.2
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 1.9e-12 77.8 92 48.9
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 1.6e-11 74.7 189 32.8


User provided reference genes

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