Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24521 Trifolium pratense HOM05D001458 ORTHO05D006787 2.1e-158 562.4 297 100.0
Ah.15g092050 Amaranthus hybridus HOM05D001458 ORTHO05D006787 1.9e-18 97.4 190 32.6
ATR0594G128 Amborella trichopoda HOM05D001458 ORTHO05D006787 2.5e-18 97.1 140 40.7
EL10Ac7g17326 Beta vulgaris HOM05D001458 ORTHO05D006787 2.5e-18 97.1 187 31.0
AUR62042916 Chenopodium quinoa HOM05D001458 ORTHO05D006787 2.5e-18 97.1 140 39.3
AUR62040528 Chenopodium quinoa HOM05D001458 ORTHO05D006787 3.3e-18 96.7 190 32.1
Eucgr.K03202 Eucalyptus grandis HOM05D001458 ORTHO05D006787 4.3e-18 96.3 166 34.9
Thhalv10015802m.g Eutrema salsugineum HOM05D001458 ORTHO05D006787 4.3e-18 96.3 166 36.1
Sp6g39760 Schrenkiella parvula HOM05D001458 ORTHO05D006787 4.3e-18 96.3 166 36.1
CARHR210510 Cardamine hirsuta HOM05D001458 ORTHO05D006787 7.3e-18 95.5 166 36.1
SMO266G0075 Selaginella moellendorffii HOM05D001458 ORTHO05D006787 9.5e-18 95.1 136 39.7
Actinidia11230 Actinidia chinensis HOM05D001458 ORTHO05D006787 1.2e-17 94.7 144 37.5
Aa31LG1G22080 Aethionema arabicum HOM05D001458 ORTHO05D006787 1.6e-17 94.4 166 34.9
AL6G12090 Arabidopsis lyrata HOM05D001458 ORTHO05D006787 1.6e-17 94.4 154 37.0
AT5G02820 Arabidopsis thaliana HOM05D001458 ORTHO05D006787 1.6e-17 94.4 154 37.0
A10p32900 Brassica napus HOM05D001458 ORTHO05D006787 1.6e-17 94.4 154 37.0
C09p73830 Brassica napus HOM05D001458 ORTHO05D006787 1.6e-17 94.4 154 37.0
BolC9t60117H Brassica oleracea HOM05D001458 ORTHO05D006787 1.6e-17 94.4 154 37.0
BraA10t45327Z Brassica rapa HOM05D001458 ORTHO05D006787 1.6e-17 94.4 154 37.0
Cre02.g084800 Chlamydomonas reinhardtii HOM05D001458 ORTHO05D006787 1.6e-17 94.4 170 34.1
Psat0ss6317g0080 Pisum sativum HOM05D001458 ORTHO05D006787 1.6e-17 94.4 144 38.2
TPR.G35661 Trifolium pratense HOM05D001458 ORTHO05D006787 1.6e-17 94.4 135 42.2
Carub.0006s0162 Capsella rubella HOM05D001458 ORTHO05D006787 2.1e-17 94.0 154 37.0
CiPaw.09G182000 Carya illinoinensis HOM05D001458 ORTHO05D006787 2.1e-17 94.0 135 40.0
Lj5g0024683 Lotus japonicus HOM05D001458 ORTHO05D006787 2.1e-17 94.0 134 41.8
MD04G1113900 Malus domestica HOM05D001458 ORTHO05D006787 2.1e-17 94.0 135 41.5
Nitab4.5_0000848g0150 Nicotiana tabacum HOM05D001458 ORTHO05D006787 2.1e-17 94.0 171 33.3
PGSC0003DMG400027900 Solanum tuberosum HOM05D001458 ORTHO05D006787 2.1e-17 94.0 171 32.7
MBI14_g28308_MAGBIO Magnolia biondii HOM05D001458 ORTHO05D006787 2.8e-17 93.6 144 36.8
Nitab4.5_0006316g0010 Nicotiana tabacum HOM05D001458 ORTHO05D006787 2.8e-17 93.6 171 33.3
Potri.006G132600 Populus trichocarpa HOM05D001458 ORTHO05D006787 2.8e-17 93.6 138 39.9
Sc07g0006220 Simmondsia chinensis HOM05D001458 ORTHO05D006787 2.8e-17 93.6 135 39.3
THA.LOC104816314 Tarenaya hassleriana HOM05D001458 ORTHO05D006787 2.8e-17 93.6 135 40.0
VMungo0464G1099 Vigna mungo HOM05D001458 ORTHO05D006787 2.8e-17 93.6 135 40.0
Cfa017488 Carpinus fangiana HOM05D001458 ORTHO05D006787 3.6e-17 93.2 135 39.3
Haze_20671 Corylus avellana HOM05D001458 ORTHO05D006787 3.6e-17 93.2 135 39.3
Duzib128G1651 Durio zibethinus HOM05D001458 ORTHO05D006787 3.6e-17 93.2 166 35.5
PGR004G0986 Punica granatum HOM05D001458 ORTHO05D006787 3.6e-17 93.2 171 34.5
Sabra06G0104100 Salix brachista HOM05D001458 ORTHO05D006787 3.6e-17 93.2 138 39.1
Cpa.g.sc45.25 Carica papaya HOM05D001458 ORTHO05D006787 4.7e-17 92.8 135 39.3
COL.COLO4_27103 Corchorus olitorius HOM05D001458 ORTHO05D006787 4.7e-17 92.8 189 32.8
Prupe.6G243200 Prunus persica HOM05D001458 ORTHO05D006787 4.7e-17 92.8 134 41.0
SalBow4G2907 Salvia bowleyana HOM05D001458 ORTHO05D006787 4.7e-17 92.8 134 41.0
Solyc09g007210.4 Solanum lycopersicum HOM05D001458 ORTHO05D006787 4.7e-17 92.8 171 32.7
Sopen09g002080 Solanum pennellii HOM05D001458 ORTHO05D006787 4.7e-17 92.8 171 32.7
SGA_v2.0_scaffold94G28657 Striga asiatica HOM05D001458 ORTHO05D006787 4.7e-17 92.8 135 40.7
HPP92_003602 Vanilla planifolia HOM05D001458 ORTHO05D006787 4.7e-17 92.8 155 36.1
CAN.G350.46 Capsicum annuum HOM05D001458 ORTHO05D006787 6.1e-17 92.4 171 32.7
Phvul.007G162700 Phaseolus vulgaris HOM05D001458 ORTHO05D006787 6.1e-17 92.4 135 39.3
Pp3c8_12030 Physcomitrium patens HOM05D001458 ORTHO05D006787 6.1e-17 92.4 134 40.3
Zm00001eb013040 Zea mays HOM05D001458 ORTHO05D006787 6.1e-17 92.4 135 37.8
CDE04G2715 Ceratophyllum demersum HOM05D001458 ORTHO05D006787 8.0e-17 92.0 153 35.9
Manes.09G070800 Manihot esculenta HOM05D001458 ORTHO05D006787 8.0e-17 92.0 135 39.3
Oeu034821.1 Olea europaea HOM05D001458 ORTHO05D006787 8.0e-17 92.0 144 37.5
GSVIVG01025540001 Vitis vinifera HOM05D001458 ORTHO05D006787 8.0e-17 92.0 189 31.7
Aqoxy4G03150 Aquilegia oxysepala HOM05D001458 ORTHO05D006787 1.0e-16 91.7 132 38.6
ECA233G5957 Erigeron canadensis HOM05D001458 ORTHO05D006787 1.0e-16 91.7 135 38.5
Glyma.10G048300 Glycine max HOM05D001458 ORTHO05D006787 1.0e-16 91.7 135 40.0
Glyma.13G136100 Glycine max HOM05D001458 ORTHO05D006787 1.0e-16 91.7 135 40.0
Thecc.05G052100 Theobroma cacao HOM05D001458 ORTHO05D006787 1.0e-16 91.7 166 34.9
CANSAT80G0404 Cannabis sativa HOM05D001458 ORTHO05D006787 1.4e-16 91.3 134 39.6
Cc06_g03430 Coffea canephora HOM05D001458 ORTHO05D006787 1.4e-16 91.3 136 38.2
HanXRQChr02g0051861 Helianthus annuus HOM05D001458 ORTHO05D006787 1.4e-16 91.3 161 35.4
MCO01G458 Micromonas commoda HOM05D001458 ORTHO05D006787 1.4e-16 91.3 135 38.5
PSO339G6008 Papaver somniferum HOM05D001458 ORTHO05D006787 1.4e-16 91.3 143 37.8
PSO384G1578 Papaver somniferum HOM05D001458 ORTHO05D006787 1.4e-16 91.3 143 37.8
Peaxi162Scf01517g00015 Petunia axillaris HOM05D001458 ORTHO05D006787 1.4e-16 91.3 171 32.7
QL07p045562 Quercus lobata HOM05D001458 ORTHO05D006787 1.4e-16 91.3 157 35.7
AagrBONN_evm.TU.Sc2ySwM_228.407 Anthoceros agrestis HOM05D001458 ORTHO05D006787 1.8e-16 90.9 138 38.4
CSS0026634 Camellia sinensis var. sinensis HOM05D001458 ORTHO05D006787 1.8e-16 90.9 135 37.8
FAN19G2582 Fragaria x ananassa HOM05D001458 ORTHO05D006787 1.8e-16 90.9 135 40.0
Gohir.D04G116300 Gossypium hirsutum HOM05D001458 ORTHO05D006787 1.8e-16 90.9 135 38.5
Gorai.009G420900 Gossypium raimondii HOM05D001458 ORTHO05D006787 1.8e-16 90.9 135 38.5
Lsat_1_v5_gn_6_29580 Lactuca sativa HOM05D001458 ORTHO05D006787 1.8e-16 90.9 140 38.6
Lj3A977T51 Lonicera japonica HOM05D001458 ORTHO05D006787 1.8e-16 90.9 135 39.3
Lalb_Chr21g0314581 Lupinus albus HOM05D001458 ORTHO05D006787 1.8e-16 90.9 166 34.9
RhsimUnG0119500 Rhododendron simsii HOM05D001458 ORTHO05D006787 1.8e-16 90.9 171 32.7
RcHm_v2.0_Chr2g0116961 Rosa chinensis HOM05D001458 ORTHO05D006787 1.8e-16 90.9 138 39.9
arahy.Tifrunner.gnm1.ann1.DP4C8A Arachis hypogaea HOM05D001458 ORTHO05D006787 2.3e-16 90.5 134 39.6
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 2.3e-16 90.5 134 38.1
Os03g0284800 Oryza sativa ssp. japonica HOM05D001458 ORTHO05D006787 2.3e-16 90.5 135 37.8
TWI18G0556 Tripterygium wilfordii HOM05D001458 ORTHO05D006787 2.3e-16 90.5 135 37.8
arahy.Tifrunner.gnm1.ann1.YX38EM Arachis hypogaea HOM05D001458 ORTHO05D006787 3.1e-16 90.1 190 31.6
Migut.L01653 Erythranthe guttata HOM05D001458 ORTHO05D006787 3.1e-16 90.1 135 39.3
FvH4_1g22710 Fragaria vesca HOM05D001458 ORTHO05D006787 3.1e-16 90.1 134 40.3
FAN23G1932 Fragaria x ananassa HOM05D001458 ORTHO05D006787 3.1e-16 90.1 134 40.3
FAN26G1855 Fragaria x ananassa HOM05D001458 ORTHO05D006787 3.1e-16 90.1 134 40.3
Mapoly0114s0011 Marchantia polymorpha HOM05D001458 ORTHO05D006787 3.1e-16 90.1 138 39.1
Sed0021994 Sechium edule HOM05D001458 ORTHO05D006787 3.1e-16 90.1 135 37.8
SEGI_09198 Sequoiadendron giganteum HOM05D001458 ORTHO05D006787 3.1e-16 90.1 130 38.5
Ca_02309_v3 Cicer arietinum L. HOM05D001458 ORTHO05D006787 4.0e-16 89.7 134 39.6
Ciclev10011761m.g Citrus clementina HOM05D001458 ORTHO05D006787 4.0e-16 89.7 166 34.3
MELO3C003071.2 Cucumis melo HOM05D001458 ORTHO05D006787 5.2e-16 89.4 134 38.1
CsaV3_4G024390 Cucumis sativus L. HOM05D001458 ORTHO05D006787 5.2e-16 89.4 134 38.1
Hma1.2p1_0350F.1_g132690 Hydrangea macrophylla HOM05D001458 ORTHO05D006787 5.2e-16 89.4 135 38.5
Medtr1g067040 Medicago truncatula HOM05D001458 ORTHO05D006787 5.2e-16 89.4 134 38.8
ClCG04G008770 Citrullus lanatus HOM05D001458 ORTHO05D006787 6.8e-16 89.0 134 38.1
TAR369G1107 Trochodendron aralioides HOM05D001458 ORTHO05D006787 8.9e-16 88.6 135 38.5
Atru.BG.202.p Acer truncatum HOM05D001458 ORTHO05D006787 1.2e-15 88.2 134 41.8
Nn2g10614 Nelumbo nucifera HOM05D001458 ORTHO05D006787 1.5e-15 87.8 190 31.1
arahy.Tifrunner.gnm1.ann1.TU257H Arachis hypogaea HOM05D001458 ORTHO05D006787 2.0e-15 87.4 134 38.8
DCAR_009271 Daucus carota HOM05D001458 ORTHO05D006787 2.6e-15 87.0 161 34.2
Gohir.A04G077200 Gossypium hirsutum HOM05D001458 ORTHO05D006787 2.6e-15 87.0 123 39.0
PRCOL_00005653 Prasinoderma coloniale HOM05D001458 ORTHO05D006787 2.6e-15 87.0 175 32.6
MD08G1212100 Malus domestica HOM05D001458 ORTHO05D006787 2.9e-14 83.6 136 40.4
BcaC06g32012 Brassica carinata HOM05D001458 ORTHO05D006787 4.9e-14 82.8 97 43.3
vmacro20070 Vaccinium macrocarpon HOM05D001458 ORTHO05D006787 2.4e-13 80.5 183 30.1
CBR_g20285 Chara braunii HOM05D001458 ORTHO05D006787 1.2e-12 78.2 97 40.2
Os12g0622500 Oryza sativa ssp. japonica HOM05D001458 ORTHO05D006787 7.3e-10 68.9 145 29.7
TPR.G40031 Trifolium pratense HOM05D001458 ORTHO05D036745 9.5e-10 68.6 140 31.4
LjContig00312_ERROPOS870357g0025239 Lotus japonicus HOM05D001458 ORTHO05D008462 3.6e-09 66.6 122 37.7
Zm00001eb172550 Zea mays HOM05D001458 ORTHO05D008462 8.0e-09 65.5 109 33.9
Pp3c15_16330 Physcomitrium patens HOM05D001458 ORTHO05D008462 1.1e-08 65.1 146 31.5
FvH4_3g06060 Fragaria vesca HOM05D001458 ORTHO05D006787 2.3e-08 63.9 142 31.0
FAN24G1719 Fragaria x ananassa HOM05D001458 ORTHO05D045816 5.2e-08 62.8 120 31.7
Os08g0156900 Oryza sativa ssp. japonica HOM05D001458 ORTHO05D008462 8.9e-08 62.0 120 33.3
FvH4_2g33020 Fragaria vesca HOM05D001458 ORTHO05D045816 1.2e-07 61.6 120 31.7
Medtr5g009990 Medicago truncatula HOM05D001458 ORTHO05D008462 1.2e-07 61.6 123 34.1
arahy.Tifrunner.gnm1.ann1.8L89DK Arachis hypogaea HOM05D001458 ORTHO05D008462 1.5e-07 61.2 123 34.1
SMO239G0116 Selaginella moellendorffii HOM05D001458 ORTHO05D007170 1.5e-07 61.2 124 29.0
Psat2g183760 Pisum sativum HOM05D001458 ORTHO05D008462 2.6e-07 60.5 123 35.8
TPR.G31630 Trifolium pratense HOM05D001458 ORTHO05D008462 2.6e-07 60.5 86 38.4
TPR.G628 Trifolium pratense HOM05D001458 ORTHO05D006787 2.6e-07 60.5 82 39.0
Aqoxy1G04244 Aquilegia oxysepala HOM05D001458 ORTHO05D007170 3.4e-07 60.1 87 32.2
PGR031G1458 Punica granatum HOM05D001458 ORTHO05D007170 3.4e-07 60.1 87 32.2
LjContig00081g0000365 Lotus japonicus HOM05D001458 ORTHO05D007170 4.4e-07 59.7 93 31.2
RcHm_v2.0_Chr7g0196581 Rosa chinensis HOM05D001458 ORTHO05D008462 4.4e-07 59.7 107 30.8
Medtr5g095090 Medicago truncatula HOM05D001458 ORTHO05D007170 5.8e-07 59.3 93 30.1
Psat4g050240 Pisum sativum HOM05D001458 ORTHO05D007170 5.8e-07 59.3 93 30.1
RcHm_v2.0_Chr5g0010071 Rosa chinensis HOM05D001458 ORTHO05D006787 5.8e-07 59.3 114 32.5
Sed0010799 Sechium edule HOM05D001458 ORTHO05D007170 5.8e-07 59.3 88 33.0
TPR.G6687 Trifolium pratense HOM05D001458 ORTHO05D008462 5.8e-07 59.3 122 33.6
CiPaw.11G202700 Carya illinoinensis HOM05D001458 ORTHO05D007170 9.8e-07 58.5 88 31.8
Glyma.11G021300 Glycine max HOM05D001458 ORTHO05D008462 9.8e-07 58.5 123 35.0
Lj1g0016902 Lotus japonicus HOM05D001458 ORTHO05D007170 9.8e-07 58.5 93 31.2
VMungo1215G0710 Vigna mungo HOM05D001458 ORTHO05D008462 9.8e-07 58.5 123 34.1
MBI04_g30489_MAGBIO Magnolia biondii HOM05D001458 ORTHO05D008462 1.7e-06 57.8 109 33.0
PGR042G0367 Punica granatum HOM05D001458 ORTHO05D008462 1.7e-06 57.8 108 32.4
Sopen07g033650 Solanum pennellii HOM05D001458 ORTHO05D007170 1.7e-06 57.8 87 31.0
THA.LOC104810290 Tarenaya hassleriana HOM05D001458 ORTHO05D007170 1.7e-06 57.8 88 31.8
CsaV3_7G017270 Cucumis sativus L. HOM05D001458 ORTHO05D007170 2.2e-06 57.4 88 33.0
CsaV3_7G017280 Cucumis sativus L. HOM05D001458 ORTHO05D007170 2.2e-06 57.4 88 33.0
CsaV3_7G018280 Cucumis sativus L. HOM05D001458 ORTHO05D007170 2.2e-06 57.4 88 33.0
CsaV3_UNG200520 Cucumis sativus L. HOM05D001458 ORTHO05D007170 2.2e-06 57.4 88 33.0
CsaV3_UNG214460 Cucumis sativus L. HOM05D001458 ORTHO05D007170 2.2e-06 57.4 88 33.0
ECA236G2484 Erigeron canadensis HOM05D003423 ORTHO05D003910 2.2e-06 57.4 87 29.9
Migut.M01660 Erythranthe guttata HOM05D001458 ORTHO05D007170 2.2e-06 57.4 88 33.0
RcHm_v2.0_Chr5g0062071 Rosa chinensis HOM05D001458 ORTHO05D029446 2.2e-06 57.4 88 36.4
CAN.G2569.1 Capsicum annuum HOM05D001458 ORTHO05D007170 2.9e-06 57.0 87 31.0
CAN.G337.9 Capsicum annuum HOM05D001458 ORTHO05D007170 2.9e-06 57.0 87 31.0
AUR62026049 Chenopodium quinoa HOM05D001458 ORTHO05D008462 2.9e-06 57.0 109 30.3
MELO3C024924.2 Cucumis melo HOM05D001458 ORTHO05D007170 2.9e-06 57.0 88 33.0
Duzib170G0318 Durio zibethinus HOM05D001458 ORTHO05D007170 2.9e-06 57.0 88 31.8
Manes.15G061000 Manihot esculenta HOM05D001458 ORTHO05D007170 2.9e-06 57.0 107 30.8
PSO266G0060 Papaver somniferum HOM05D001458 ORTHO05D008462 2.9e-06 57.0 109 33.0
PSO478G0962 Papaver somniferum HOM05D001458 ORTHO05D008462 2.9e-06 57.0 109 33.0
SEGI_03081 Sequoiadendron giganteum HOM05D001458 ORTHO05D008462 2.9e-06 57.0 108 35.2
Ah.09g237560 Amaranthus hybridus HOM05D001458 ORTHO05D008462 3.7e-06 56.6 109 31.2
Aqoxy1G00281 Aquilegia oxysepala HOM05D001458 ORTHO05D006787 3.7e-06 56.6 109 33.9
MD11G1201200 Malus domestica HOM05D001458 ORTHO05D007170 3.7e-06 56.6 88 31.8
Phvul.008G278300 Phaseolus vulgaris HOM05D001458 ORTHO05D007170 3.7e-06 56.6 88 30.7
Psat2g008560 Pisum sativum HOM05D001458 ORTHO05D007170 3.7e-06 56.6 93 29.0
Prupe.4G241800 Prunus persica HOM05D001458 ORTHO05D007170 3.7e-06 56.6 102 29.4
Aa31LG2G1080 Aethionema arabicum HOM05D001458 ORTHO05D008462 4.9e-06 56.2 109 33.9
Thhalv10022332m.g Eutrema salsugineum HOM05D001458 ORTHO05D007170 4.9e-06 56.2 88 31.8
HanXRQChr05g0161861 Helianthus annuus HOM05D001458 ORTHO05D007170 4.9e-06 56.2 87 29.9
Hma1.2p1_0889F.1_g232825 Hydrangea macrophylla HOM05D001458 ORTHO05D007170 4.9e-06 56.2 87 31.0
Potri.001G099100 Populus trichocarpa HOM05D001458 ORTHO05D008462 4.9e-06 56.2 109 32.1
Gohir.A01G090600 Gossypium hirsutum HOM05D001458 ORTHO05D007170 6.4e-06 55.8 88 31.8
Gohir.D01G075900 Gossypium hirsutum HOM05D001458 ORTHO05D007170 6.4e-06 55.8 88 31.8
Gorai.002G099100 Gossypium raimondii HOM05D001458 ORTHO05D007170 6.4e-06 55.8 88 31.8
Manes.10G032400 Manihot esculenta HOM05D001458 ORTHO05D008462 6.4e-06 55.8 122 32.8
Nitab4.5_0006886g0030 Nicotiana tabacum HOM05D001458 ORTHO05D007170 6.4e-06 55.8 87 31.0
Hund01905 Selenicereus undatus HOM05D001458 ORTHO05D007170 6.4e-06 55.8 77 33.8
Thecc.03G286600 Theobroma cacao HOM05D001458 ORTHO05D008462 6.4e-06 55.8 109 31.2
CANSAT21G0931 Cannabis sativa HOM05D001458 ORTHO05D008462 8.3e-06 55.5 110 30.0
Thhalv10023831m.g Eutrema salsugineum HOM05D001458 ORTHO05D008462 8.3e-06 55.5 109 30.3
PGSC0003DMG401022175 Solanum tuberosum HOM05D001458 ORTHO05D007170 8.3e-06 55.5 87 29.9


User provided reference genes

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