Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 3.1e-148 528.9 359 100.0
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 1.7e-130 469.9 387 83.2
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 3.7e-117 425.6 365 76.4
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 5.0e-114 415.2 364 83.8
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 2.3e-106 389.8 365 81.6
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 1.6e-96 357.1 368 68.8
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 2.8e-96 356.3 367 68.7
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 9.8e-94 347.8 366 68.6
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 6.4e-93 345.1 379 71.2
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 8.3e-93 344.7 365 66.3
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 3.0e-90 336.3 367 71.7
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 3.9e-90 335.9 368 64.9
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 3.9e-90 335.9 367 69.2
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 3.9e-90 335.9 367 69.2
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 8.6e-90 334.7 368 67.1
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.2e-88 330.9 368 72.6
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 2.1e-88 330.1 369 70.2
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 3.6e-88 329.3 369 65.9
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 8.0e-88 328.2 365 65.2
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.3e-87 326.6 367 68.4
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 2.2e-85 320.1 369 64.2
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 8.3e-85 318.2 362 67.4
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 1.4e-84 317.4 366 68.0
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 7.0e-84 315.1 361 60.9
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 7.0e-84 315.1 378 66.7
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 2.1e-83 313.5 367 65.4
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 7.8e-83 311.6 364 67.6
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 1.0e-82 311.2 361 64.3
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 1.0e-82 311.2 361 64.5
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 8.6e-82 308.1 352 65.3
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 1.9e-81 307.0 361 64.0
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 7.3e-81 305.1 367 65.9
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.6e-80 303.9 364 67.0
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 2.3e-79 300.1 367 66.2
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 8.9e-79 298.1 362 60.8
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 2.2e-77 293.5 364 56.6
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 3.7e-77 292.7 362 64.4
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.9e-76 290.4 410 60.0
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.9e-76 290.4 410 60.0
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 5.4e-76 288.9 368 67.9
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 3.5e-75 286.2 369 65.3
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 4.6e-75 285.8 371 65.5
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 2.3e-74 283.5 371 68.2
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 3.9e-74 282.7 361 61.2
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 4.3e-73 279.3 370 64.3
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 9.5e-73 278.1 375 65.6
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 9.5e-73 278.1 375 61.1
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 2.1e-72 276.9 365 66.0
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 3.1e-71 273.1 379 57.0
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 3.1e-71 273.1 365 66.6
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 1.5e-70 270.8 380 55.8
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 2.0e-70 270.4 367 65.9
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 5.8e-70 268.9 380 56.1
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 1.1e-68 264.6 362 59.9
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 1.9e-68 263.8 366 58.2
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.9e-68 263.8 352 61.6
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 1.9e-68 263.8 356 53.7
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 2.4e-68 263.5 362 60.8
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 5.4e-68 262.3 362 60.8
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 1.6e-67 260.8 372 59.4
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 2.3e-66 256.9 378 63.2
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 3.0e-66 256.5 370 60.3
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 2.5e-65 253.4 376 63.8
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 2.5e-65 253.4 374 64.4
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 2.5e-65 253.4 365 58.1
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 3.3e-65 253.1 367 56.9
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 5.6e-65 252.3 368 63.0
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 5.6e-65 252.3 358 56.7
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 9.6e-65 251.5 400 57.5
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 2.1e-64 250.4 369 57.5
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 2.8e-64 250.0 371 61.2
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 4.8e-64 249.2 357 50.7
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 2.4e-63 246.9 381 61.2
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 3.1e-63 246.5 368 59.5
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 6.9e-63 245.4 366 58.5
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 7.6e-62 241.9 359 57.1
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 7.6e-62 241.9 353 61.8
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.9e-61 240.0 378 61.1
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 2.9e-61 240.0 378 61.1
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 4.9e-61 239.2 376 57.2
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 5.4e-60 235.7 374 61.5
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 4.6e-59 232.6 364 44.8
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 6.0e-59 232.3 377 59.4
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 1.3e-58 231.1 293 67.6
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 1.3e-58 231.1 371 62.0
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 2.3e-58 230.3 364 44.2
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 5.1e-58 229.2 378 52.9
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 5.1e-58 229.2 332 64.5
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 9.6e-57 224.9 369 50.9
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 3.6e-56 223.0 368 52.4
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 8.1e-56 221.9 368 60.1
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 3.1e-55 219.9 340 64.1
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 4.0e-55 219.5 367 60.5
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 2.0e-54 217.2 397 51.4
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 4.5e-54 216.1 373 59.2
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 5.8e-54 215.7 375 58.1
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 5.8e-54 215.7 375 58.1
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 7.6e-54 215.3 373 57.9
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 7.6e-54 215.3 390 49.5
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 6.4e-53 212.2 373 57.6
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 1.1e-52 211.5 375 57.3
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 1.1e-52 211.5 365 52.9
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.9e-52 210.7 369 51.5
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 1.6e-51 207.6 367 54.0
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 2.1e-51 207.2 354 50.6
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 2.1e-51 207.2 375 52.3
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 6.7e-50 202.2 368 44.0
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 4.3e-49 199.5 180 75.6
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 4.3e-49 199.5 333 58.3
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 5.6e-49 199.1 365 54.8
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 7.4e-49 198.7 271 52.4
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 2.1e-48 197.2 354 46.6
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 8.1e-48 195.3 372 55.1
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 4.0e-47 193.0 372 56.5
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 5.3e-47 192.6 339 51.6
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 6.9e-47 192.2 378 54.8
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 3.4e-46 189.9 341 55.7
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 2.2e-45 187.2 371 53.6
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 5.5e-44 182.6 368 53.5
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 2.1e-43 180.6 369 49.3
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 1.0e-42 178.3 372 52.7
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 1.0e-42 178.3 359 39.6
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 9.0e-39 165.2 179 74.3
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 2.0e-38 164.1 369 52.0
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 2.0e-38 164.1 375 46.7
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 7.6e-38 162.2 361 49.0
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 2.5e-36 157.1 376 46.8
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.8e-34 151.0 366 47.3
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 5.7e-33 146.0 366 38.5
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 5.7e-33 146.0 368 43.5
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 9.7e-33 145.2 350 40.9
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 9.7e-33 145.2 350 40.9
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 2.8e-32 143.7 366 38.3
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.8e-31 141.0 180 53.3
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 5.9e-30 136.0 659 30.3
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.3e-29 134.8 365 38.9
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 5.0e-29 132.9 362 46.7
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 5.0e-29 132.9 362 46.7
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 1.6e-27 127.9 365 37.3
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 7.9e-27 125.6 365 37.3
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.0e-26 125.2 358 38.3
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.0e-26 125.2 358 38.3
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.0e-26 123.6 267 44.9
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 5.1e-26 122.9 182 59.3
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.0e-25 120.9 205 52.2
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 2.8e-24 117.1 110 66.4
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 1.8e-23 114.4 113 64.6
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 4.1e-23 113.2 105 70.5
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 3.4e-22 110.2 146 60.3
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 6.5e-21 105.9 211 43.6
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 5.1e-18 96.3 76 71.1
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 5.1e-18 96.3 76 71.1
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 5.1e-18 96.3 144 48.6
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 6.7e-18 95.9 166 48.2
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.5e-17 94.7 106 55.7
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 7.4e-17 92.4 94 59.6
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 9.7e-17 92.0 65 73.8
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 3.5e-14 83.6 71 60.6
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 5.9e-14 82.8 173 43.9
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.0e-13 82.0 206 37.4
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.5e-12 78.2 72 58.3
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 7.2e-12 75.9 240 35.4
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 2.7e-11 73.9 65 53.8
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 8.0e-11 72.4 202 39.6
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 1.4e-07 61.6 61 49.2
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 2.0e-06 57.8 54 57.4


User provided reference genes

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