Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1730.3 871 100.0
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1440.2 871 82.5
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1379.8 870 77.9
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1379.4 870 77.1
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1377.1 871 78.5
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1376.3 868 77.8
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1373.6 868 77.4
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1373.6 868 77.4
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1372.8 871 78.4
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1370.5 873 78.5
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1369.4 871 78.3
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1364.7 871 77.6
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1361.7 873 77.3
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1361.3 870 77.8
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1356.3 874 78.1
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1352.0 867 76.6
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1352.0 870 77.0
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1350.1 867 76.5
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1349.0 873 75.4
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1343.6 871 77.0
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1343.6 873 76.4
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1342.8 873 77.1
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1342.0 884 75.2
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1340.9 871 76.7
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1339.7 868 76.3
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1337.8 870 74.8
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1337.0 871 77.3
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1335.1 873 76.6
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1333.5 870 74.6
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1331.6 873 76.6
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1330.9 873 76.6
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1328.9 871 75.2
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1327.8 866 76.1
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1324.3 901 73.5
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1323.9 867 75.3
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1317.4 892 74.2
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1315.1 872 73.6
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1315.1 872 74.9
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1312.7 867 75.1
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1310.4 873 74.7
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1308.1 874 74.0
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1306.6 935 70.8
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1302.3 874 73.7
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1300.4 873 73.2
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1300.0 866 74.2
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1298.9 872 73.5
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1296.2 874 73.8
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1288.9 874 73.1
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1283.5 866 72.4
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1276.5 872 71.8
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1274.2 871 71.8
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1273.5 871 71.0
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1271.5 871 70.8
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1270.0 837 74.8
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1269.2 868 71.2
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1266.9 867 70.4
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1266.5 884 71.7
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1266.5 874 72.2
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1265.4 1013 65.1
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1252.7 869 71.9
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1251.9 867 70.9
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1251.9 847 73.8
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1251.9 873 71.5
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1238.8 870 70.2
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1233.8 880 70.1
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1232.6 869 71.1
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 0.0e+00 1230.7 872 71.2
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1226.8 872 70.2
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1224.9 929 67.7
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1223.0 872 70.1
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 0.0e+00 1216.8 867 69.2
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1216.1 870 69.3
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1213.4 868 68.4
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 0.0e+00 1208.7 868 68.2
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 0.0e+00 1208.4 868 67.7
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 0.0e+00 1205.7 868 68.0
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1204.5 868 68.0
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 0.0e+00 1204.5 866 70.2
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1204.1 865 68.6
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 0.0e+00 1203.0 868 67.9
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1201.4 868 67.9
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 0.0e+00 1201.0 869 67.7
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 0.0e+00 1200.7 868 67.7
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1196.4 901 69.3
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1189.9 791 74.3
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 0.0e+00 1179.5 915 64.4
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 0.0e+00 1176.4 874 66.2
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 0.0e+00 1174.1 868 66.1
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 0.0e+00 1166.0 954 63.3
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 0.0e+00 1153.3 880 65.3
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 0.0e+00 1152.1 872 64.9
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1100.9 696 78.3
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 0.0e+00 1094.0 942 62.1
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 0.0e+00 1078.5 902 62.6
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 0.0e+00 1077.4 752 73.5
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 9.7e-305 1050.0 795 68.1
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 4.4e-297 1024.6 646 78.6
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 6.1e-275 951.0 630 75.7
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 3.1e-274 948.7 883 52.8
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 2.2e-272 942.6 881 53.7
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 3.5e-270 935.3 878 52.3
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 4.2e-239 832.0 890 52.4
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 2.9e-232 809.3 876 46.0
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 3.8e-224 782.3 584 70.5
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 1.2e-222 777.3 560 69.3
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 1.3e-211 740.7 495 75.6
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 1.3e-208 730.7 970 42.6
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 6.5e-200 701.8 487 72.5
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 8.2e-187 658.3 854 45.4
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 9.8e-180 634.8 501 63.3
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 1.3e-179 634.4 387 77.8
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 3.1e-178 629.8 448 71.7
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 5.5e-175 619.0 487 60.8
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 6.4e-147 525.8 333 76.3
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 6.4e-139 499.2 626 46.2
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 7.6e-132 475.7 378 63.0
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 4.5e-92 343.6 387 52.2
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 2.2e-86 324.7 242 64.5
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 2.5e-82 311.2 162 88.3
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 1.4e-69 268.9 701 27.2
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 8.5e-59 233.0 685 26.9
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 4.7e-57 227.3 216 57.4
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.4e-37 161.8 125 62.4
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 5.0e-35 154.1 543 24.7
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 5.2e-32 144.1 135 51.9
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.4e-31 141.4 120 56.7
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 9.8e-31 139.8 121 60.3
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 3.7e-30 137.9 126 56.3
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 5.4e-29 134.0 637 22.8
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 9.2e-29 133.3 115 60.0
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 8.4e-22 110.2 131 42.7
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 3.9e-19 101.3 90 53.3
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 5.8e-15 87.4 42 85.7
MBI19_g44872_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 2.1e-12 79.0 83 53.0
SEGI_02402 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 7.6e-07 60.5 43 60.5
QL10p024418 Quercus lobata HOM05D005600 ORTHO05D006682 1.7e-06 59.3 50 60.0
Hund17892 Selenicereus undatus HOM05D026955 ORTHO05D006682 2.9e-06 58.5 28 89.3
Sabra16G0154900 Salix brachista HOM05D005600 ORTHO05D349220 8.4e-06 57.0 42 59.5


User provided reference genes

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