Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 5.2e-136 487.6 237 100.0
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 3.9e-75 285.4 169 78.7
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 8.0e-68 261.2 169 72.8
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 1.7e-65 253.4 165 70.9
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 6.3e-65 251.5 220 57.3
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 8.3e-65 251.1 175 68.6
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.8e-64 250.0 177 66.7
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 1.7e-62 243.4 173 65.9
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 2.2e-62 243.0 170 67.1
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 3.8e-62 242.3 169 68.6
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 3.8e-62 242.3 204 59.8
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 2.5e-61 239.6 175 65.1
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 3.2e-61 239.2 170 66.5
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 4.2e-61 238.8 168 67.9
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 4.2e-61 238.8 170 66.5
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 4.2e-61 238.8 169 68.0
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.2e-60 237.3 180 63.9
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 2.7e-60 236.1 169 65.7
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 3.6e-60 235.7 175 66.3
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 3.6e-60 235.7 176 66.5
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 6.1e-60 235.0 170 65.3
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 2.3e-59 233.0 165 65.5
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 3.0e-59 232.6 169 65.1
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 6.8e-59 231.5 165 62.4
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 6.8e-59 231.5 170 65.3
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 2.0e-58 229.9 180 62.2
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 2.6e-58 229.6 202 59.4
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 4.4e-58 228.8 201 55.7
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 5.7e-58 228.4 169 68.0
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 9.8e-58 227.6 194 59.8
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 1.7e-57 226.9 208 55.8
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 8.3e-57 224.6 201 55.2
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 1.1e-56 224.2 169 63.3
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 3.1e-56 222.6 168 64.3
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 4.1e-56 222.2 166 63.9
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 1.2e-55 220.7 173 61.8
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 1.2e-55 220.7 200 55.0
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 1.6e-55 220.3 161 64.6
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 3.5e-55 219.2 162 64.2
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 4.5e-55 218.8 162 64.2
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 2.3e-54 216.5 233 49.4
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 5.0e-54 215.3 163 62.6
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 1.1e-53 214.2 161 66.5
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 1.9e-53 213.4 161 63.4
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 5.5e-53 211.8 159 61.6
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 7.2e-53 211.5 162 61.7
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 9.5e-53 211.1 184 59.2
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 9.5e-53 211.1 161 63.4
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 1.2e-52 210.7 186 58.1
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.2e-52 210.7 167 63.5
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 1.2e-52 210.7 202 52.0
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 2.1e-52 209.9 168 64.3
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 2.8e-52 209.5 185 57.3
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.8e-52 209.5 185 57.3
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 3.6e-52 209.1 164 64.0
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 4.7e-52 208.8 169 60.9
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 6.1e-52 208.4 161 61.5
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 1.0e-51 207.6 161 62.7
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 1.0e-51 207.6 159 62.9
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.8e-51 206.8 162 61.7
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.8e-51 206.8 162 61.7
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 2.3e-51 206.5 165 60.0
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 3.0e-51 206.1 161 64.6
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.2e-51 205.3 167 58.1
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 1.5e-50 203.8 177 55.4
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 1.5e-50 203.8 163 62.0
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 1.5e-50 203.8 159 61.6
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 2.6e-50 203.0 162 64.2
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 2.6e-50 203.0 162 64.2
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 2.6e-50 203.0 169 60.4
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 2.6e-50 203.0 159 61.6
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.4e-50 202.2 159 60.4
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.4e-50 202.2 162 59.9
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 5.7e-50 201.8 168 58.9
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 5.7e-50 201.8 159 61.0
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.7e-50 201.8 174 54.6
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 7.5e-50 201.4 187 55.6
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 7.5e-50 201.4 160 62.5
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 9.8e-50 201.1 173 59.0
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 2.2e-49 199.9 173 58.4
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.2e-49 199.9 172 58.7
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.1e-48 197.6 186 54.3
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.4e-48 197.2 174 56.3
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 1.4e-48 197.2 172 58.7
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 4.1e-48 195.7 173 57.8
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.1e-48 195.7 167 58.1
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 5.4e-48 195.3 176 57.4
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 5.4e-48 195.3 168 57.7
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 7.0e-48 194.9 160 59.4
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 9.2e-48 194.5 174 57.5
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 9.2e-48 194.5 161 58.4
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 1.2e-47 194.1 164 57.9
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.6e-47 193.7 174 56.3
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.6e-47 193.7 174 56.3
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 2.0e-47 193.4 171 55.0
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 3.5e-47 192.6 159 59.1
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 4.5e-47 192.2 195 51.3
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 5.9e-47 191.8 162 56.2
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 5.9e-47 191.8 168 56.5
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 7.8e-47 191.4 169 56.2
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 7.8e-47 191.4 162 56.2
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 7.8e-47 191.4 162 56.2
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 7.8e-47 191.4 162 60.5
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 3.9e-46 189.1 163 55.8
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 5.0e-46 188.7 175 54.3
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 6.6e-46 188.3 142 64.1
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 6.6e-46 188.3 144 65.3
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 1.9e-45 186.8 155 62.6
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 2.5e-45 186.4 164 54.9
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 2.5e-45 186.4 172 54.1
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 2.5e-45 186.4 155 58.7
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 3.3e-45 186.0 174 51.7
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 3.3e-45 186.0 167 59.3
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.3e-45 185.7 162 54.3
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 2.1e-44 183.3 171 55.6
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.1e-44 183.3 162 54.9
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 2.8e-44 183.0 160 55.0
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 1.4e-43 180.6 169 55.0
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.8e-43 180.3 173 53.8
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 1.8e-43 180.3 169 54.4
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 1.8e-43 180.3 142 64.8
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 3.1e-43 179.5 167 55.1
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 5.2e-43 178.7 169 55.6
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 5.2e-43 178.7 167 55.1
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 5.2e-43 178.7 169 53.8
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 5.2e-43 178.7 167 55.1
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 6.8e-43 178.3 165 57.0
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 8.9e-43 177.9 174 51.7
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 8.9e-43 177.9 163 56.4
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 1.5e-42 177.2 169 53.8
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.5e-42 177.2 181 53.0
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.0e-42 176.8 138 60.9
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 2.6e-42 176.4 157 56.1
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 3.4e-42 176.0 159 56.6
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 9.8e-42 174.5 159 56.6
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 2.2e-41 173.3 160 55.0
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.2e-41 173.3 132 62.1
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.9e-41 172.2 142 59.2
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 4.9e-41 172.2 165 55.2
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 4.9e-41 172.2 215 41.9
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 8.3e-41 171.4 159 56.0
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 8.3e-41 171.4 159 56.0
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 1.9e-40 170.2 201 45.3
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 3.2e-40 169.5 159 53.5
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 3.2e-40 169.5 157 56.1
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.2e-39 167.5 159 52.8
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.6e-39 167.2 129 60.5
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 1.6e-39 167.2 141 58.2
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 2.7e-39 166.4 141 57.4
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 2.3e-38 163.3 175 50.3
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 6.6e-38 161.8 158 53.2
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.5e-37 160.6 152 53.3
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 5.6e-37 158.7 159 52.8
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.8e-35 153.7 167 47.3
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 8.9e-35 151.4 100 73.0
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.6e-34 149.8 99 71.7
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 1.3e-33 147.5 116 63.8
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 4.9e-33 145.6 101 67.3
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 1.1e-32 144.4 175 41.7
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 7.1e-32 141.7 165 44.2
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 3.0e-30 136.3 120 60.0
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 2.5e-29 133.3 181 42.5
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 6.8e-27 125.2 105 61.9
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.7e-23 113.2 174 39.1
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.0e-22 111.3 91 58.2
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.1e-21 107.8 161 39.8
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 2.5e-21 106.7 135 45.9
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 2.1e-20 103.6 73 68.5
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 2.8e-20 103.2 84 56.0
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 3.1e-19 99.8 163 36.2
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 2.4e-16 90.1 188 31.9
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 2.1e-15 87.0 88 45.5
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 8.7e-14 81.6 137 38.7
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 1.6e-12 77.4 172 28.5
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 4.4e-10 69.3 61 54.1
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 1.1e-08 64.7 97 36.1
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 3.5e-07 59.7 77 41.6


User provided reference genes

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