Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0612 Trochodendron aralioides HOM05D002341 ORTHO05D020177 7.7e-61 236.9 114 100.0
CSS0044190 Camellia sinensis var. sinensis HOM05D002341 ORTHO05D003165 2.8e-50 201.8 107 89.7
GSVIVG01017346001 Vitis vinifera HOM05D002341 ORTHO05D003165 1.8e-49 199.1 107 88.8
TAR625G0212 Trochodendron aralioides HOM05D002341 ORTHO05D003165 2.3e-49 198.7 108 90.7
Dinv30610 Davidia involucrata HOM05D002341 ORTHO05D003165 3.1e-49 198.4 107 87.9
Dinv38126 Davidia involucrata HOM05D002341 ORTHO05D003165 3.1e-49 198.4 107 87.9
MD00G1072300 Malus domestica HOM05D002341 ORTHO05D003165 6.8e-49 197.2 107 87.9
MD17G1212800 Malus domestica HOM05D002341 ORTHO05D003165 1.5e-48 196.1 107 86.9
Prupe.3G088200 Prunus persica HOM05D002341 ORTHO05D003165 1.5e-48 196.1 107 86.9
CANSAT56G2164 Cannabis sativa HOM05D002341 ORTHO05D003165 2.0e-48 195.7 107 86.9
CiPaw.01G248600 Carya illinoinensis HOM05D002341 ORTHO05D003165 3.4e-48 194.9 107 87.9
Actinidia15757 Actinidia chinensis HOM05D002341 ORTHO05D003165 5.8e-48 194.1 107 86.0
ClCG09G002950 Citrullus lanatus HOM05D002341 ORTHO05D003165 5.8e-48 194.1 107 86.9
MELO3C023427.2 Cucumis melo HOM05D002341 ORTHO05D003165 5.8e-48 194.1 107 86.9
CsaV3_7G032320 Cucumis sativus L. HOM05D002341 ORTHO05D003165 5.8e-48 194.1 107 86.9
Cfa001956 Carpinus fangiana HOM05D002341 ORTHO05D003165 1.3e-47 193.0 107 86.9
Haze_16566 Corylus avellana HOM05D002341 ORTHO05D003165 1.3e-47 193.0 107 86.9
QL05p031390 Quercus lobata HOM05D002341 ORTHO05D003165 1.3e-47 193.0 107 86.9
Hma1.2p1_0017F.1_g011180 Hydrangea macrophylla HOM05D002341 ORTHO05D003165 2.2e-47 192.2 107 85.0
Sed0003553 Sechium edule HOM05D002341 ORTHO05D003165 4.9e-47 191.0 107 85.0
Sed0021407 Sechium edule HOM05D002341 ORTHO05D003165 1.1e-46 189.9 108 86.1
vmacro19000 Vaccinium macrocarpon HOM05D002341 ORTHO05D003165 4.1e-46 188.0 108 85.2
Rhsim08G0212600 Rhododendron simsii HOM05D002341 ORTHO05D003165 2.0e-45 185.7 108 83.3
FvH4_6g29610 Fragaria vesca HOM05D002341 ORTHO05D003165 4.6e-45 184.5 107 82.2
FAN02G2239 Fragaria x ananassa HOM05D002341 ORTHO05D003165 4.6e-45 184.5 107 82.2
FAN05G4711 Fragaria x ananassa HOM05D002341 ORTHO05D003165 4.6e-45 184.5 107 82.2
FAN09G3038 Fragaria x ananassa HOM05D002341 ORTHO05D003165 4.6e-45 184.5 107 82.2
FAN14G4930 Fragaria x ananassa HOM05D002341 ORTHO05D003165 4.6e-45 184.5 107 82.2
Lsat_1_v5_gn_1_34320 Lactuca sativa HOM05D002341 ORTHO05D003165 4.6e-45 184.5 121 77.7
RcHm_v2.0_Chr2g0135211 Rosa chinensis HOM05D002341 ORTHO05D003165 4.6e-45 184.5 107 82.2
Ca_01053_v3 Cicer arietinum L. HOM05D002341 ORTHO05D003165 1.0e-44 183.3 115 80.0
Medtr2g103960 Medicago truncatula HOM05D002341 ORTHO05D003165 1.0e-44 183.3 115 80.0
Psat5g302520 Pisum sativum HOM05D002341 ORTHO05D003165 1.0e-44 183.3 115 80.0
Manes.04G112400 Manihot esculenta HOM05D002341 ORTHO05D003165 2.3e-44 182.2 116 80.2
HanXRQChr04g0097891 Helianthus annuus HOM05D002341 ORTHO05D003165 6.6e-44 180.6 121 76.0
Glyma.15G007100 Glycine max HOM05D002341 ORTHO05D003165 1.1e-43 179.9 117 76.9
ATR0800G142 Amborella trichopoda HOM05D002341 ORTHO05D003165 1.5e-43 179.5 110 81.8
THA.LOC104812513 Tarenaya hassleriana HOM05D002341 ORTHO05D003165 1.5e-43 179.5 120 76.7
VMungo1080G1733 Vigna mungo HOM05D002341 ORTHO05D003165 2.5e-43 178.7 117 76.1
THA.LOC104800410 Tarenaya hassleriana HOM05D002341 ORTHO05D003165 3.3e-43 178.3 120 76.7
COL.COLO4_11940 Corchorus olitorius HOM05D002341 ORTHO05D003165 5.6e-43 177.6 110 81.8
Lj3g0016754 Lotus japonicus HOM05D002341 ORTHO05D003165 5.6e-43 177.6 115 78.3
Carub.0002s2745 Capsella rubella HOM05D002341 ORTHO05D003165 2.8e-42 175.3 121 74.4
Thhalv10017992m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 2.8e-42 175.3 121 72.7
BcaB06g28506 Brassica carinata HOM05D002341 ORTHO05D003165 3.6e-42 174.9 119 74.8
BolC4t27552H Brassica oleracea HOM05D002341 ORTHO05D003165 3.6e-42 174.9 119 74.8
Phvul.005G178600 Phaseolus vulgaris HOM05D002341 ORTHO05D003165 4.7e-42 174.5 117 75.2
EL10Ac9g21877 Beta vulgaris HOM05D002341 ORTHO05D003165 6.2e-42 174.1 118 76.3
COL.COLO4_24410 Corchorus olitorius HOM05D002341 ORTHO05D003165 8.1e-42 173.7 110 79.1
ECA247G2936 Erigeron canadensis HOM05D002341 ORTHO05D003165 8.1e-42 173.7 125 72.8
BcaC09g51361 Brassica carinata HOM05D002341 ORTHO05D003165 1.1e-41 173.3 120 73.3
BcaNung01746 Brassica carinata HOM05D002341 ORTHO05D003165 1.1e-41 173.3 123 73.2
C01p13930 Brassica napus HOM05D002341 ORTHO05D003165 1.1e-41 173.3 120 73.3
C04p60530 Brassica napus HOM05D002341 ORTHO05D003165 1.1e-41 173.3 118 73.7
BolC1t01360H Brassica oleracea HOM05D002341 ORTHO05D003165 1.1e-41 173.3 120 73.3
Glyma.13G366100 Glycine max HOM05D002341 ORTHO05D003165 1.1e-41 173.3 117 75.2
Potri.003G031900 Populus trichocarpa HOM05D002341 ORTHO05D003165 2.3e-41 172.2 116 76.7
Manes.11G057400 Manihot esculenta HOM05D002341 ORTHO05D003165 3.1e-41 171.8 116 75.9
TWI75G1620 Tripterygium wilfordii HOM05D002341 ORTHO05D003165 3.1e-41 171.8 121 76.0
Sabra03G0018200 Salix brachista HOM05D002341 ORTHO05D003165 4.0e-41 171.4 116 75.0
AT1G80070 Arabidopsis thaliana HOM05D002341 ORTHO05D003165 5.2e-41 171.0 121 71.9
BcaB06g28420 Brassica carinata HOM05D002341 ORTHO05D003165 5.2e-41 171.0 120 73.3
arahy.Tifrunner.gnm1.ann1.B7D93H Arachis hypogaea HOM05D002341 ORTHO05D003165 6.8e-41 170.6 119 73.9
arahy.Tifrunner.gnm1.ann1.DCJ864 Arachis hypogaea HOM05D002341 ORTHO05D003165 6.8e-41 170.6 119 73.9
PSO170G3007 Papaver somniferum HOM05D002341 ORTHO05D003165 1.2e-40 169.9 85 94.1
Sp5g35830 Schrenkiella parvula HOM05D002341 ORTHO05D003165 1.2e-40 169.9 121 71.1
CARHR074430 Cardamine hirsuta HOM05D002341 ORTHO05D003165 1.5e-40 169.5 119 73.1
Eucgr.F03935 Eucalyptus grandis HOM05D002341 ORTHO05D003165 1.5e-40 169.5 111 78.4
Eucgr.F03879 Eucalyptus grandis HOM05D002341 ORTHO05D003165 2.0e-40 169.1 111 77.5
PSO017G1385 Papaver somniferum HOM05D002341 ORTHO05D003165 2.0e-40 169.1 85 92.9
Lalb_Chr14g0373851 Lupinus albus HOM05D002341 ORTHO05D003165 2.6e-40 168.7 116 75.9
Atru.chr1.2928 Acer truncatum HOM05D002341 ORTHO05D003165 3.4e-40 168.3 112 78.6
SEGI_03160 Sequoiadendron giganteum HOM05D002341 ORTHO05D003165 3.4e-40 168.3 115 73.0
Nn2g12097 Nelumbo nucifera HOM05D002341 ORTHO05D003165 9.8e-40 166.8 85 92.9
AL2G41470 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 1.3e-39 166.4 121 70.2
BraA04t17913Z Brassica rapa HOM05D002341 ORTHO05D003165 1.7e-39 166.0 119 71.4
DCAR_025515 Daucus carota HOM05D002341 ORTHO05D003165 1.7e-39 166.0 121 70.2
CDE02G3147 Ceratophyllum demersum HOM05D002341 ORTHO05D003165 2.2e-39 165.6 85 91.8
AUR62011512 Chenopodium quinoa HOM05D002341 ORTHO05D003165 3.7e-39 164.9 118 72.9
CDE09G0407 Ceratophyllum demersum HOM05D002341 ORTHO05D003165 4.9e-39 164.5 85 90.6
A04p23900 Brassica napus HOM05D002341 ORTHO05D003165 8.3e-39 163.7 119 70.6
Cpa.g.sc67.48 Carica papaya HOM05D002341 ORTHO05D003165 8.3e-39 163.7 118 73.7
Aa31LG3G3350 Aethionema arabicum HOM05D002341 ORTHO05D003165 1.4e-38 162.9 133 66.2
Ah.01g020550 Amaranthus hybridus HOM05D002341 ORTHO05D003165 2.4e-38 162.2 118 71.2
Aqoxy3G03781 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 2.4e-38 162.2 85 90.6
MSTRG.9422 Avicennia marina HOM05D002341 ORTHO05D003165 2.4e-38 162.2 126 67.5
Nn8g39518 Nelumbo nucifera HOM05D002341 ORTHO05D003165 2.4e-38 162.2 85 90.6
Ciclev10024683m.g Citrus clementina HOM05D002341 ORTHO05D003165 1.2e-37 159.8 113 74.3
PGR102G3099 Punica granatum HOM05D002341 ORTHO05D003165 2.1e-37 159.1 84 89.3
Oeu045135.1 Olea europaea HOM05D002341 ORTHO05D003165 2.7e-37 158.7 125 68.8
Oeu005942.1 Olea europaea HOM05D002341 ORTHO05D003165 3.5e-37 158.3 102 78.4
Hund00514 Selenicereus undatus HOM05D002341 ORTHO05D003165 4.6e-37 157.9 89 86.5
Nitab4.5_0007065g0030 Nicotiana tabacum HOM05D002341 ORTHO05D003165 7.8e-37 157.1 101 79.2
BraA01t01116Z Brassica rapa HOM05D002341 ORTHO05D003165 1.0e-36 156.8 121 68.6
SGA_v2.0_scaffold26G11346 Striga asiatica HOM05D002341 ORTHO05D003165 1.3e-36 156.4 126 66.7
Sc10g0008090 Simmondsia chinensis HOM05D002341 ORTHO05D003165 5.1e-36 154.5 95 78.9
A01p11740 Brassica napus HOM05D002341 ORTHO05D003165 6.6e-36 154.1 121 67.8
Migut.D01080 Erythranthe guttata HOM05D002341 ORTHO05D003165 1.1e-35 153.3 128 64.1
CAN.G147.16 Capsicum annuum HOM05D002341 ORTHO05D003165 1.9e-35 152.5 95 81.1
Lalb_Chr24g0395471 Lupinus albus HOM05D002341 ORTHO05D003165 1.9e-35 152.5 116 70.7
Duzib160G0553 Durio zibethinus HOM05D002341 ORTHO05D003165 3.3e-35 151.8 87 86.2
Duzib235G1417 Durio zibethinus HOM05D002341 ORTHO05D003165 3.3e-35 151.8 87 86.2
Thecc.06G025500 Theobroma cacao HOM05D002341 ORTHO05D003165 3.3e-35 151.8 87 86.2
Lj9C499G5 Lonicera japonica HOM05D002341 ORTHO05D003165 4.3e-35 151.4 122 66.4
Gorai.009G127700 Gossypium raimondii HOM05D002341 ORTHO05D003165 5.6e-35 151.0 87 86.2
Gorai.011G084400 Gossypium raimondii HOM05D002341 ORTHO05D003165 5.6e-35 151.0 87 87.4
Nitab4.5_0002890g0050 Nicotiana tabacum HOM05D002341 ORTHO05D003165 5.6e-35 151.0 151 56.3
Peaxi162Scf00089g00635 Petunia axillaris HOM05D002341 ORTHO05D003165 5.6e-35 151.0 132 62.1
Peaxi162Scf01838g00019 Petunia axillaris HOM05D002341 ORTHO05D003165 9.5e-35 150.2 83 89.2
Nitab4.5_0000366g0200 Nicotiana tabacum HOM05D002341 ORTHO05D003165 1.2e-34 149.8 83 88.0
Solyc07g008880.3 Solanum lycopersicum HOM05D002341 ORTHO05D003165 1.2e-34 149.8 83 88.0
Sopen07g004810 Solanum pennellii HOM05D002341 ORTHO05D003165 1.2e-34 149.8 83 88.0
PGSC0003DMG400028736 Solanum tuberosum HOM05D002341 ORTHO05D003165 1.2e-34 149.8 83 88.0
MSTRG.4705 Avicennia marina HOM05D002341 ORTHO05D003165 2.1e-34 149.1 85 83.5
SalBow6G3017 Salvia bowleyana HOM05D002341 ORTHO05D003165 2.1e-34 149.1 137 59.9
SalBow6G5900 Salvia bowleyana HOM05D002341 ORTHO05D003165 2.1e-34 149.1 137 59.9
Cc00_g08660 Coffea canephora HOM05D002341 ORTHO05D003165 4.7e-34 147.9 82 87.8
Cc01_g01870 Coffea canephora HOM05D002341 ORTHO05D003165 4.7e-34 147.9 82 87.8
Pp3c24_20910 Physcomitrium patens HOM05D002341 ORTHO05D003165 4.7e-34 147.9 90 78.9
unitig_747.g21300 Utricularia gibba HOM05D002341 ORTHO05D003165 4.7e-34 147.9 119 66.4
AagrBONN_evm.TU.Sc2ySwM_362.189 Anthoceros agrestis HOM05D002341 ORTHO05D003165 4.0e-33 144.8 74 89.2
BcaC02g12021 Brassica carinata HOM05D002341 ORTHO05D003165 5.2e-33 144.4 111 66.7
HanXRQChr02g0033481 Helianthus annuus HOM05D002341 ORTHO05D003165 5.2e-33 144.4 84 82.1
Mapoly0019s0008 Marchantia polymorpha HOM05D002341 ORTHO05D003165 5.2e-33 144.4 73 90.4
Pp3c8_25090 Physcomitrium patens HOM05D002341 ORTHO05D003165 6.8e-33 144.1 90 77.8
Os05g0163250 Oryza sativa ssp. japonica HOM05D002341 ORTHO05D003165 1.5e-32 142.9 78 87.2
Zm00001eb375530 Zea mays HOM05D002341 ORTHO05D003165 1.5e-32 142.9 78 87.2
TPR.G24585 Trifolium pratense HOM05D002341 ORTHO05D003165 5.8e-32 141.0 94 71.3
CBR_g48660 Chara braunii HOM05D002341 ORTHO05D003165 2.2e-31 139.0 94 71.3
Cre01.g016050 Chlamydomonas reinhardtii HOM05D002341 ORTHO05D003165 2.2e-31 139.0 103 68.9
SHI11229 Sapria himalayana HOM05D002341 ORTHO05D003165 2.9e-31 138.7 137 57.7
Zm00001eb271550 Zea mays HOM05D002341 ORTHO05D003165 4.9e-31 137.9 78 83.3
C04p08780 Brassica napus HOM05D002341 ORTHO05D003165 6.4e-31 137.5 108 63.9
BolC4t22470H Brassica oleracea HOM05D002341 ORTHO05D003165 6.4e-31 137.5 108 63.9
SMO145G0262 Selaginella moellendorffii HOM05D002341 ORTHO05D003165 1.4e-30 136.3 121 61.2
Thhalv10024184m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 1.2e-29 133.3 93 67.7
Prupe.3G223400 Prunus persica HOM05D002341 ORTHO05D003165 4.6e-29 131.3 107 59.8
BcaB02g09158 Brassica carinata HOM05D002341 ORTHO05D003165 6.0e-29 131.0 80 77.5
A05p07330 Brassica napus HOM05D002341 ORTHO05D003165 6.0e-29 131.0 76 78.9
Medtr8g011150 Medicago truncatula HOM05D002341 ORTHO05D003165 7.8e-29 130.6 105 62.9
MCO02G483 Micromonas commoda HOM05D002341 ORTHO05D003165 1.0e-28 130.2 71 81.7
BraA05t19698Z Brassica rapa HOM05D002341 ORTHO05D003165 1.7e-28 129.4 70 85.7
AUR62016331 Chenopodium quinoa HOM05D002341 ORTHO05D003165 3.0e-28 128.6 60 98.3
C05p39580 Brassica napus HOM05D002341 ORTHO05D020177 8.6e-28 127.1 69 85.5
C05p39590 Brassica napus HOM05D002341 ORTHO05D003165 3.3e-27 125.2 69 84.1
DCAR_022311 Daucus carota HOM05D002341 ORTHO05D003165 2.1e-26 122.5 71 77.5
Aqoxy180s004 Aquilegia oxysepala HOM05D002341 ORTHO05D017369 2.4e-25 119.0 72 72.2
Aqoxy3G02657 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 2.4e-25 119.0 72 72.2
RcHm_v2.0_Chr2g0160631 Rosa chinensis HOM05D002341 ORTHO05D003165 3.1e-25 118.6 113 56.6
FAN05G3102 Fragaria x ananassa HOM05D002341 ORTHO05D020177 2.0e-24 115.9 112 56.2
FAN14G1989 Fragaria x ananassa HOM05D002341 ORTHO05D003165 2.6e-24 115.5 113 55.8
FvH4_6g43880 Fragaria vesca HOM05D002341 ORTHO05D003165 4.4e-24 114.8 113 55.8
PRCOL_00001855 Prasinoderma coloniale HOM05D002341 ORTHO05D003165 3.8e-23 111.7 74 71.6
FAN09G0817 Fragaria x ananassa HOM05D002341 ORTHO05D003165 4.9e-23 111.3 109 53.2
ECA246G5065 Erigeron canadensis HOM05D002341 ORTHO05D003165 1.1e-22 110.2 68 70.6
Haze_26409 Corylus avellana HOM05D002341 ORTHO05D003165 3.5e-21 105.1 72 66.7
Cfa023699 Carpinus fangiana HOM05D002341 ORTHO05D003165 4.3e-19 98.2 83 53.0
CAN.G2186.1 Capsicum annuum HOM05D002341 ORTHO05D020177 7.3e-19 97.4 78 73.1
Gohir.D10G077850 Gossypium hirsutum HOM05D002341 ORTHO05D020177 2.1e-18 95.9 61 83.6
CAN.G32.13 Capsicum annuum HOM05D002341 ORTHO05D020177 2.8e-18 95.5 125 47.2
CAN.G366.3 Capsicum annuum HOM05D001717 ORTHO05D022168 4.8e-18 94.7 78 70.5
AL7G10650 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 6.4e-15 84.3 119 47.9
AT4G38780 Arabidopsis thaliana HOM05D002341 ORTHO05D003165 9.3e-14 80.5 119 44.5
BcaC05g27955 Brassica carinata HOM05D002341 ORTHO05D003165 1.0e-12 77.0 37 89.2
Peaxi162Scf00128g01033 Petunia axillaris HOM05D002341 ORTHO05D020177 4.5e-08 61.6 94 46.8
SEGI_15815 Sequoiadendron giganteum HOM05D002341 ORTHO05D003165 2.9e-07 58.9 26 92.3


User provided reference genes

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