Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.0e-142 510.0 244 100.0
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 3.4e-114 415.2 244 79.9
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 9.3e-112 407.1 244 79.1
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.1e-109 400.2 243 77.0
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 4.8e-108 394.8 245 77.6
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 5.3e-107 391.3 240 77.5
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 6.9e-107 391.0 239 76.6
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 9.9e-106 387.1 241 76.3
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 2.9e-105 385.6 240 76.7
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 4.9e-105 384.8 241 75.9
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 2.4e-104 382.5 241 73.0
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 4.2e-104 381.7 244 73.0
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.6e-103 379.8 244 74.6
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.1e-103 379.4 245 75.9
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 2.7e-103 379.0 240 72.9
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 2.7e-103 379.0 239 74.1
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 8.7e-102 374.0 243 72.4
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 5.6e-101 371.3 245 71.4
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 1.6e-100 369.8 241 73.9
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 4.8e-100 368.2 235 74.0
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 3.1e-99 365.5 237 72.6
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 3.1e-99 365.5 240 72.1
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 5.3e-99 364.8 240 71.2
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 6.9e-99 364.4 241 72.6
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 1.5e-98 363.2 242 66.9
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 2.0e-98 362.8 243 71.2
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 2.6e-98 362.5 243 70.8
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 2.6e-98 362.5 243 71.6
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 3.4e-98 362.1 239 72.8
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 5.8e-98 361.3 239 72.4
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 5.8e-98 361.3 243 71.2
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 5.8e-98 361.3 244 70.9
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.3e-97 360.1 243 70.8
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 8.4e-97 357.5 240 71.7
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 2.4e-96 355.9 239 69.9
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 4.2e-96 355.1 239 68.6
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 9.3e-96 354.0 239 69.9
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 1.2e-95 353.6 235 72.3
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 1.6e-95 353.2 238 68.5
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 2.1e-95 352.8 239 71.1
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 7.9e-95 350.9 242 70.2
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 5.1e-94 348.2 257 67.7
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 8.7e-94 347.4 236 70.3
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 2.5e-93 345.9 238 69.7
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 1.3e-92 343.6 235 69.4
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 6.2e-92 341.3 242 69.4
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 2.4e-91 339.3 235 68.9
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 5.3e-91 338.2 244 66.8
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 1.2e-90 337.0 233 69.5
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.6e-90 335.9 233 68.7
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 5.8e-90 334.7 259 64.9
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 5.8e-90 334.7 243 63.8
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 7.6e-90 334.3 233 68.7
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 1.3e-89 333.6 243 67.5
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.7e-89 333.2 240 69.2
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 2.9e-89 332.4 233 68.7
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 1.1e-88 330.5 233 67.4
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 1.1e-88 330.5 242 66.9
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.1e-88 330.5 237 69.2
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.9e-88 329.7 233 68.2
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.5e-88 329.3 242 66.1
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.5e-88 328.2 243 64.6
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 5.5e-88 328.2 236 66.9
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 5.5e-88 328.2 236 66.9
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 7.1e-88 327.8 242 66.5
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 1.2e-87 327.0 241 68.5
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 1.6e-87 326.6 235 67.7
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 2.7e-87 325.9 241 66.8
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.5e-87 325.5 242 65.3
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.0e-87 324.7 243 63.4
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 7.9e-87 324.3 251 64.9
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.3e-86 323.6 242 65.7
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 2.3e-86 322.8 238 65.5
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 3.0e-86 322.4 241 65.1
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 3.0e-86 322.4 241 67.2
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 6.7e-86 321.2 251 64.5
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 8.7e-86 320.9 241 66.4
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.1e-85 320.5 242 65.3
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 2.5e-85 319.3 236 65.3
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.3e-85 318.9 242 65.3
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 4.3e-85 318.5 243 65.8
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 5.7e-85 318.2 216 70.4
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 9.7e-85 317.4 248 63.7
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 9.7e-85 317.4 242 65.7
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 9.7e-85 317.4 242 65.7
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 3.7e-84 315.5 243 64.2
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 5.3e-83 311.6 236 63.1
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 5.3e-83 311.6 233 64.8
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 5.3e-83 311.6 239 64.9
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 9.0e-83 310.8 235 64.7
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 9.0e-83 310.8 243 61.7
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 2.6e-82 309.3 218 68.3
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 7.6e-82 307.8 236 62.3
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 7.6e-82 307.8 236 62.3
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 1.3e-81 307.0 236 63.1
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 2.2e-81 306.2 248 62.9
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 6.5e-81 304.7 240 63.3
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 8.5e-81 304.3 242 60.7
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 9.4e-80 300.8 212 69.8
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 9.4e-80 300.8 246 61.4
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 9.4e-80 300.8 246 61.4
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.6e-79 298.5 236 59.7
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 6.1e-79 298.1 233 60.5
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.0e-78 297.4 242 59.9
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 1.8e-78 296.6 238 61.3
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 8.8e-78 294.3 236 60.2
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.1e-77 293.9 240 61.2
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 1.5e-77 293.5 238 60.9
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 2.5e-77 292.7 228 60.1
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 4.3e-77 292.0 238 60.5
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 5.7e-77 291.6 240 60.4
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 7.4e-77 291.2 242 59.5
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 7.4e-77 291.2 238 60.5
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 7.4e-77 291.2 239 59.8
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 7.4e-77 291.2 236 62.3
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 1.3e-76 290.4 238 59.7
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.7e-76 290.0 246 59.3
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 2.2e-76 289.7 239 57.7
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 3.7e-76 288.9 224 63.8
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 3.7e-76 288.9 238 60.5
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 4.8e-76 288.5 240 61.2
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.1e-75 287.3 206 66.5
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.1e-75 287.3 169 78.7
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.4e-75 287.0 238 60.5
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.8e-75 286.6 238 58.8
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 2.4e-75 286.2 234 59.8
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 4.1e-75 285.4 238 59.7
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 6.9e-75 284.6 239 61.9
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 9.1e-75 284.3 236 59.3
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 9.1e-75 284.3 236 59.3
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 1.5e-74 283.5 238 59.7
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 1.5e-74 283.5 238 59.7
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 2.0e-74 283.1 238 59.7
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 4.5e-74 282.0 224 60.7
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.3e-73 280.4 206 65.5
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 3.8e-73 278.9 216 62.0
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 1.1e-72 277.3 241 59.8
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 1.9e-72 276.6 244 57.4
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 1.2e-71 273.9 245 54.3
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 2.7e-71 272.7 231 57.1
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 2.7e-71 272.7 235 57.0
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 8.8e-70 267.7 258 55.0
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 7.4e-69 264.6 235 55.7
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 8.2e-68 261.2 238 56.7
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 9.1e-67 257.7 243 53.9
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.0e-65 254.2 231 55.0
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 6.5e-65 251.5 210 58.6
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 8.5e-65 251.1 223 57.4
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 2.5e-64 249.6 190 62.1
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 3.2e-64 249.2 233 55.4
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 5.7e-61 238.4 242 52.1
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 7.4e-61 238.0 238 51.7
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 1.0e-57 227.6 185 63.8
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 6.5e-57 224.9 157 69.4
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.2e-55 220.7 163 65.0
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.7e-55 219.5 243 49.8
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.5e-53 213.8 158 63.9
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 4.8e-52 208.8 163 58.9
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 8.5e-49 198.0 208 51.9
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 7.2e-48 194.9 269 39.8
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.6e-47 192.6 200 52.5
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 3.6e-47 192.6 262 42.0
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 7.5e-45 184.9 129 66.7
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 2.9e-41 172.9 144 61.1
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.8e-41 172.6 191 49.2
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 4.7e-39 165.6 116 69.0
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 4.0e-38 162.5 100 75.0
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 6.3e-36 155.2 128 61.7
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 2.3e-33 146.7 120 63.3
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.1e-31 138.7 107 61.7
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 1.2e-29 134.4 118 58.5
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.6e-26 124.0 93 63.4
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 1.2e-23 114.4 166 39.2
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 6.2e-23 112.1 143 47.6
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 1.4e-22 110.9 89 58.4
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 1.8e-22 110.5 191 35.6
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 1.8e-22 110.5 73 72.6
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 2.1e-18 97.1 82 51.2
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 7.8e-18 95.1 96 49.0
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 2.3e-17 93.6 80 53.8
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 6.2e-15 85.5 122 35.2
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 4.1e-11 72.8 61 54.1
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 7.1e-11 72.0 267 25.1
Cfa023727 Carpinus fangiana HOM05D003786 ORTHO05D004375 1.1e-06 58.2 135 29.6
Zm00001eb022270 Zea mays HOM05D028996 ORTHO05D004375 2.4e-06 57.0 62 46.8
Zm00001eb030490 Zea mays HOM05D028996 ORTHO05D004375 2.4e-06 57.0 61 45.9


User provided reference genes

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