Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 3.6e-85 318.9 264 100.0
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 8.6e-79 297.7 154 99.4
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 2.8e-77 292.7 151 100.0
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 2.8e-77 292.7 151 100.0
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 8.0e-77 291.2 154 96.8
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.0e-76 290.8 154 96.8
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.4e-76 290.4 150 100.0
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 4.0e-76 288.9 150 99.3
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 1.5e-75 287.0 151 96.7
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 1.5e-75 287.0 151 96.0
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 1.5e-75 287.0 151 96.7
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 1.5e-75 287.0 151 96.0
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 1.5e-75 287.0 151 96.0
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 2.6e-75 286.2 151 96.0
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 2.6e-75 286.2 151 96.0
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 5.7e-75 285.0 151 96.0
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 1.3e-74 283.9 151 95.4
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 1.3e-74 283.9 151 95.4
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.3e-74 283.9 154 93.5
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 1.7e-74 283.5 152 96.7
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 2.9e-74 282.7 151 94.7
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 3.7e-74 282.3 154 94.2
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 4.1e-73 278.9 154 92.9
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 7.0e-73 278.1 156 93.6
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 9.2e-73 277.7 154 93.5
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 1.2e-72 277.3 151 94.0
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 2.0e-72 276.6 151 94.0
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 2.0e-72 276.6 151 94.0
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 3.5e-72 275.8 145 95.9
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 3.5e-72 275.8 154 90.9
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 3.5e-72 275.8 151 92.7
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 3.5e-72 275.8 151 92.7
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 3.5e-72 275.8 151 93.4
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 5.9e-72 275.0 154 90.9
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 1.0e-71 274.2 151 92.7
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 1.0e-71 274.2 153 94.1
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 1.0e-71 274.2 151 92.7
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 1.0e-71 274.2 151 92.7
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 1.0e-71 274.2 154 90.3
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 1.0e-71 274.2 154 91.6
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 1.3e-71 273.9 151 92.1
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 1.7e-71 273.5 151 92.7
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 2.3e-71 273.1 151 90.7
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 3.9e-71 272.3 156 90.4
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 3.9e-71 272.3 156 90.4
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 3.9e-71 272.3 155 90.3
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 3.9e-71 272.3 151 92.1
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 5.0e-71 271.9 151 92.1
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 6.6e-71 271.6 151 90.1
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 6.6e-71 271.6 151 91.4
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 8.6e-71 271.2 151 89.4
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 1.1e-70 270.8 155 89.0
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 1.1e-70 270.8 151 91.4
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 1.1e-70 270.8 156 90.4
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 1.5e-70 270.4 154 90.9
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 1.9e-70 270.0 151 89.4
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 1.9e-70 270.0 151 89.4
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 1.9e-70 270.0 151 91.4
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 1.9e-70 270.0 151 90.7
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 2.5e-70 269.6 155 89.0
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 3.3e-70 269.2 156 89.1
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 7.3e-70 268.1 156 89.1
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 9.5e-70 267.7 155 88.4
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 1.2e-69 267.3 155 91.0
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 1.2e-69 267.3 152 92.1
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.2e-69 267.3 154 90.3
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 1.6e-69 266.9 151 89.4
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 1.6e-69 266.9 145 95.2
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 2.8e-69 266.2 152 90.8
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 2.8e-69 266.2 151 90.7
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 2.8e-69 266.2 156 86.5
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.7e-69 265.4 151 91.4
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 6.2e-69 265.0 152 91.4
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.0e-68 264.2 151 88.1
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.0e-68 264.2 147 92.5
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 1.4e-68 263.8 153 90.8
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.4e-68 263.8 154 89.0
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 2.3e-68 263.1 152 90.8
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 2.3e-68 263.1 151 91.4
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 2.3e-68 263.1 151 91.4
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 3.1e-68 262.7 152 90.1
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 3.1e-68 262.7 152 88.2
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 4.0e-68 262.3 154 87.7
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 5.2e-68 261.9 154 89.0
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 6.8e-68 261.5 156 87.2
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.2e-67 260.8 154 88.3
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 1.2e-67 260.8 152 89.5
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.5e-67 260.4 151 88.1
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 2.0e-67 260.0 152 88.8
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 2.6e-67 259.6 152 88.8
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 3.4e-67 259.2 151 88.7
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 5.8e-67 258.5 154 87.0
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 5.8e-67 258.5 148 88.5
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 5.8e-67 258.5 151 88.1
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 5.8e-67 258.5 154 87.7
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 9.8e-67 257.7 153 86.9
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 9.8e-67 257.7 153 86.9
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 9.8e-67 257.7 153 86.9
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 1.7e-66 256.9 157 86.6
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 2.2e-66 256.5 151 88.7
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.2e-66 256.5 151 88.7
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.9e-66 256.1 151 88.1
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.9e-66 256.1 151 88.1
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 2.9e-66 256.1 152 86.8
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 3.7e-66 255.8 154 87.7
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 4.9e-66 255.4 147 90.5
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 4.9e-66 255.4 154 86.4
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 6.4e-66 255.0 151 88.1
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 8.3e-66 254.6 154 87.7
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.4e-65 253.8 151 86.8
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 1.4e-65 253.8 154 87.7
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 1.4e-65 253.8 156 85.9
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.9e-65 253.4 153 86.3
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.9e-65 253.4 153 86.3
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 1.9e-65 253.4 153 85.6
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 2.7e-64 249.6 154 83.8
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.5e-64 249.2 147 87.1
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 4.6e-64 248.8 155 83.2
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 4.6e-64 248.8 154 83.1
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 3.0e-63 246.1 151 84.1
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 3.9e-63 245.7 153 82.4
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 5.0e-63 245.4 149 87.2
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 1.5e-62 243.8 141 89.4
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 3.3e-62 242.7 144 88.2
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 7.3e-62 241.5 154 82.5
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 9.5e-62 241.1 151 84.1
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 8.1e-61 238.0 156 80.1
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 3.1e-60 236.1 130 93.1
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 2.6e-59 233.0 142 85.2
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 1.1e-57 227.6 158 77.8
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 2.4e-57 226.5 151 78.8
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 9.2e-57 224.6 149 78.5
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 1.6e-56 223.8 152 77.6
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 6.0e-56 221.9 126 90.5
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 5.1e-55 218.8 136 83.1
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 7.3e-54 214.9 121 91.7
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 3.6e-53 212.6 121 90.9
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 6.2e-53 211.8 154 74.7
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 6.2e-53 211.8 154 74.7
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 5.2e-52 208.8 120 86.7
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 8.9e-52 208.0 149 72.5
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 2.4e-49 199.9 151 72.8
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 7.8e-48 194.9 158 70.3
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 9.6e-46 188.0 146 65.8
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 6.2e-45 185.3 109 88.1
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 1.2e-43 181.0 151 64.9
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 7.6e-43 178.3 152 65.8
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 1.7e-42 177.2 124 76.6
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 3.9e-39 166.0 151 62.3
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 3.1e-36 156.4 94 86.2
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 1.2e-35 154.5 109 76.1
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 3.4e-35 152.9 94 81.9
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.3e-29 134.4 153 52.3
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.3e-29 134.4 153 52.3
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.3e-29 134.4 153 52.3
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.8e-29 133.3 153 52.3
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 2.9e-26 123.2 138 52.9
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.3e-22 109.8 140 50.7
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 2.2e-18 97.1 53 86.8
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 1.5e-14 84.3 43 95.3
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 1.9e-14 84.0 44 93.2
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 2.1e-13 80.5 50 78.0
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 2.1e-13 80.5 40 97.5
EL10Ac1g00433 Beta vulgaris HOM05D004370 ORTHO05D005084 6.7e-07 58.9 67 55.2


User provided reference genes

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