Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 3.9e-207 724.5 364 100.0
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 1.1e-193 679.9 364 94.0
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 7.9e-192 673.7 364 93.1
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 7.9e-192 673.7 364 93.1
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 1.4e-191 672.9 371 91.6
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 1.4e-191 672.9 366 92.9
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 1.9e-190 669.1 366 92.3
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 4.3e-190 667.9 371 90.8
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 7.4e-190 667.2 366 91.8
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 9.7e-190 666.8 366 91.3
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 9.7e-190 666.8 366 92.1
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 9.7e-190 666.8 366 91.3
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 1.3e-189 666.4 366 91.8
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 1.4e-188 662.9 371 90.6
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 1.8e-188 662.5 372 89.8
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 1.3e-173 613.2 383 82.8
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 1.2e-163 580.1 364 78.6
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 6.5e-162 574.3 364 77.5
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 9.4e-161 570.5 377 76.7
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 1.0e-159 567.0 364 76.4
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 8.3e-157 557.4 364 75.3
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 1.1e-156 557.0 371 75.2
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 4.1e-156 555.1 370 75.4
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 5.4e-156 554.7 369 75.9
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 7.0e-156 554.3 370 75.1
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 7.0e-156 554.3 365 75.9
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 5.9e-155 551.2 364 76.4
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 5.9e-155 551.2 365 75.3
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 5.9e-155 551.2 364 73.9
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 7.7e-155 550.8 364 74.2
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 1.7e-154 549.7 371 74.9
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 1.7e-154 549.7 364 76.1
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 2.3e-154 549.3 365 74.8
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 2.9e-154 548.9 364 74.7
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 6.6e-154 547.7 370 74.6
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 2.5e-153 545.8 364 73.4
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 5.5e-153 544.7 365 73.2
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 7.2e-153 544.3 378 72.0
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 1.6e-152 543.1 364 72.8
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 2.8e-152 542.3 365 72.9
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 3.6e-152 542.0 365 75.9
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 1.4e-151 540.0 373 72.9
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 1.4e-151 540.0 379 71.8
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 2.3e-151 539.3 364 73.9
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 3.0e-151 538.9 364 73.4
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 3.0e-151 538.9 364 73.4
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 5.2e-151 538.1 365 74.2
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 8.9e-151 537.3 379 71.2
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 1.2e-150 537.0 368 72.6
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 1.2e-150 537.0 379 71.0
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.7e-149 533.1 379 71.2
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 2.2e-149 532.7 364 71.7
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 3.7e-149 531.9 373 71.8
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 3.7e-149 531.9 368 72.3
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 6.3e-149 531.2 364 73.1
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 1.4e-148 530.0 365 74.2
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 7.0e-148 527.7 365 74.0
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 2.0e-147 526.2 355 73.2
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 7.8e-147 524.2 364 71.7
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 7.8e-147 524.2 379 68.9
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 7.8e-147 524.2 365 73.2
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 1.3e-146 523.5 364 72.8
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 1.7e-146 523.1 379 69.1
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 5.0e-146 521.5 379 68.9
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 6.6e-146 521.2 367 70.6
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 8.6e-146 520.8 379 69.4
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 8.6e-146 520.8 364 71.4
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 1.9e-145 519.6 366 69.9
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 3.3e-145 518.8 367 69.8
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 1.2e-142 510.4 379 67.0
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 2.0e-142 509.6 365 69.9
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 3.4e-142 508.8 366 69.7
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 8.3e-141 504.2 382 66.5
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 4.1e-140 501.9 365 69.6
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 5.4e-140 501.5 384 66.7
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 7.0e-140 501.1 376 67.3
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 1.2e-139 500.4 374 67.4
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 4.6e-139 498.4 365 68.2
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 1.0e-138 497.3 365 67.7
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 2.3e-138 496.1 397 65.2
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 3.9e-138 495.4 364 68.4
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 8.6e-138 494.2 366 67.8
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 2.5e-137 492.7 357 68.1
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 5.6e-137 491.5 376 66.5
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 2.3e-135 486.1 365 67.4
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 5.8e-134 481.5 360 66.9
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 2.2e-133 479.6 365 67.1
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 9.2e-132 474.2 317 74.1
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 2.1e-131 473.0 312 76.0
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 4.6e-131 471.9 365 65.2
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 1.0e-130 470.7 368 65.2
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 1.7e-130 469.9 367 65.7
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 5.1e-130 468.4 368 64.4
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 6.6e-130 468.0 366 65.6
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 1.1e-129 467.2 367 64.3
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 3.3e-129 465.7 369 65.0
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 5.6e-129 464.9 366 64.5
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 5.6e-129 464.9 368 64.4
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 7.3e-129 464.5 366 65.0
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 4.7e-128 461.8 366 63.4
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 1.1e-127 460.7 366 64.2
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 1.4e-127 460.3 367 64.3
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 2.3e-127 459.5 365 63.8
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 2.3e-127 459.5 368 64.1
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 6.8e-127 458.0 366 64.5
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 8.9e-127 457.6 366 62.8
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 8.3e-125 451.1 367 65.9
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 1.2e-123 447.2 365 63.3
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 1.7e-122 443.4 381 61.7
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 2.3e-122 443.0 352 65.9
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 2.3e-122 443.0 341 65.4
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 2.5e-121 439.5 364 60.2
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 1.9e-116 423.3 357 61.1
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 4.2e-116 422.2 297 73.1
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 6.0e-115 418.3 318 68.2
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 3.0e-114 416.0 386 54.1
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 7.3e-113 411.4 317 66.6
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 4.2e-108 395.6 369 55.8
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 8.7e-106 387.9 369 57.2
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 1.2e-102 377.5 363 55.4
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 8.4e-101 371.3 276 68.1
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 3.1e-95 352.8 296 60.5
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 9.0e-95 351.3 308 57.8
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 7.1e-84 315.1 189 84.7
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 2.4e-71 273.5 162 84.6
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 2.9e-69 266.5 270 51.1
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 3.2e-68 263.1 161 79.5
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 1.0e-66 258.1 364 40.7
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 4.4e-65 252.7 258 55.0
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 2.2e-61 240.4 327 46.2
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 6.5e-61 238.8 158 77.2
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 5.7e-57 225.7 210 55.2
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.8e-55 220.7 150 75.3
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 5.3e-55 219.2 331 36.6
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.1e-51 207.2 167 65.3
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 6.1e-51 205.7 181 55.2
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 7.5e-49 198.7 167 63.5
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 5.0e-45 186.0 117 82.9
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 6.1e-43 179.1 133 73.7
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 1.4e-42 177.9 133 72.9
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 2.3e-42 177.2 228 42.1
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 2.4e-31 140.6 99 77.8
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 4.1e-31 139.8 81 86.4
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 5.4e-31 139.4 99 65.7
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 1.6e-30 137.9 121 62.0
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 3.2e-23 113.6 177 39.5
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 3.5e-22 110.2 84 65.5
A07p02870 Brassica napus HOM05D012141 ORTHO05D013118 3.1e-18 97.1 72 70.8
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 1.4e-15 88.2 51 84.3
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 1.4e-15 88.2 51 84.3


User provided reference genes

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