Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1879.8 958 100.0
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1864.0 958 99.0
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1738.0 916 94.3
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1735.7 960 91.8
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1708.7 952 92.1
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1673.7 959 87.5
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1654.0 976 85.8
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1652.9 963 86.7
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1643.6 961 86.3
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1591.6 959 84.4
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1579.3 961 82.5
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1574.3 955 82.5
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1568.5 916 82.8
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1566.6 963 81.4
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1562.4 962 81.7
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1560.8 958 83.3
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1554.7 962 79.8
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1553.1 915 83.0
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1550.0 954 80.4
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1549.3 915 83.1
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1546.9 953 80.3
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1538.9 961 80.2
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1537.7 956 78.8
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1536.2 963 80.2
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1535.8 958 81.4
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1534.6 954 81.2
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1531.2 906 85.4
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1530.8 953 78.1
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1530.0 955 79.6
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1528.8 959 79.7
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1527.7 959 79.7
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1527.3 955 79.2
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1525.0 966 79.3
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1524.2 954 78.5
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1521.5 952 78.2
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1520.4 961 79.9
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1520.0 954 79.4
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1519.2 963 79.2
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1517.7 952 77.8
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1517.3 959 79.4
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1516.9 955 78.2
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1516.1 956 77.8
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1514.6 953 79.2
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1514.2 982 77.8
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1512.7 960 79.0
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1510.7 963 78.4
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1510.4 955 78.1
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1509.2 915 80.1
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1508.4 961 79.2
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1508.0 960 78.6
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1506.9 955 77.6
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1506.5 966 80.0
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1506.5 959 77.9
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1506.5 958 77.8
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1506.1 959 78.8
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1505.7 955 78.8
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1504.6 955 77.9
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1504.2 961 77.8
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1503.8 962 78.5
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1503.8 957 78.1
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1503.4 957 78.0
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1501.9 981 77.0
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1501.9 963 77.6
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1500.7 963 77.5
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1498.8 926 78.0
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1498.8 922 80.9
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1498.0 967 78.7
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1496.9 960 77.5
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1496.5 960 77.5
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1495.7 953 77.6
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1489.6 962 78.5
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1488.4 953 77.5
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1480.3 1183 67.1
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1477.2 959 77.1
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1476.5 924 78.0
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1475.3 962 75.6
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1473.8 969 76.6
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1473.8 923 79.8
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1471.1 952 77.0
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1461.4 981 73.4
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1455.3 958 76.4
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1448.0 966 74.6
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1445.3 842 82.7
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1441.4 955 75.9
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1440.2 958 75.5
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1436.8 966 73.5
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1427.2 965 73.1
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1426.0 975 74.6
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1425.6 968 75.0
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1424.5 961 75.3
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1419.8 977 74.4
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1419.8 977 74.4
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1419.1 965 72.6
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1414.4 956 74.2
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1413.7 831 81.9
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1410.6 966 74.6
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1410.6 952 72.1
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1408.7 962 74.5
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1399.4 952 73.0
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1393.6 973 73.7
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1392.9 976 73.3
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1390.6 957 73.7
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1387.5 956 69.9
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1373.6 954 70.9
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1364.0 966 71.3
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1363.2 924 72.1
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1341.6 913 70.4
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1329.3 922 71.3
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1315.1 958 68.1
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1292.3 786 80.9
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1289.6 779 81.0
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1247.3 726 83.3
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1224.2 922 64.1
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1214.5 777 73.7
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1185.6 977 63.5
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1165.2 690 83.0
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1137.1 979 59.6
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 0.0e+00 1126.7 981 58.1
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 0.0e+00 1119.4 956 61.7
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 0.0e+00 1102.4 963 58.2
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 1.3e-310 1069.7 722 75.2
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 2.2e-297 1025.8 661 77.0
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.9e-285 986.1 789 60.7
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 2.4e-272 942.6 668 72.0
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 1.1e-269 933.7 591 78.3
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.5e-253 879.4 562 78.1
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 2.3e-230 803.1 525 75.0
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 2.1e-223 780.0 600 67.3
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 5.5e-208 728.8 503 71.8
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 1.3e-206 724.2 395 85.6
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.1e-184 651.4 408 80.1
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 4.2e-184 649.4 386 81.9
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 3.9e-182 642.9 1042 37.6
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 1.1e-144 518.5 446 62.1
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 3.3e-144 516.9 419 59.4
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 8.9e-142 508.8 825 37.9
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 4.0e-118 430.3 402 57.5
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 8.9e-118 429.1 223 89.7
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 2.2e-116 424.5 252 79.0
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 3.0e-113 414.1 1052 28.5
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 3.3e-104 384.0 279 66.7
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 2.2e-100 371.3 839 31.6
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 1.7e-92 345.1 253 64.8
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 1.7e-92 345.1 253 64.8
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 4.6e-90 337.0 365 45.8
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 1.8e-89 335.1 251 65.3
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 3.5e-82 310.8 246 64.6
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 1.5e-59 235.7 148 72.3
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 2.6e-53 214.9 174 53.4
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 2.7e-50 204.9 149 61.1
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 2.7e-50 204.9 149 61.1
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 2.2e-47 195.3 139 62.6
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 3.8e-44 184.5 103 85.4
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 9.4e-43 179.9 118 71.2
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 4.7e-42 177.6 248 46.0
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 4.9e-39 167.5 172 48.8
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 7.0e-38 163.7 99 77.8
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 9.1e-38 163.3 141 49.6
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 3.8e-36 157.9 131 62.6
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.5e-35 156.0 76 92.1
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.2e-35 154.5 76 90.8
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 5.6e-35 154.1 75 93.3
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 1.6e-34 152.5 111 66.7
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.8e-34 151.8 76 89.5
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.0e-33 147.9 78 85.9
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 5.2e-33 147.5 74 90.5
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 5.7e-32 144.1 123 59.3
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 5.4e-30 137.5 88 78.4
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 3.5e-29 134.8 94 70.2
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 6.6e-28 130.6 78 80.8
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 8.9e-25 120.2 65 84.6
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 9.8e-24 116.7 143 44.8
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 1.7e-23 115.9 113 50.4
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 1.2e-21 109.8 124 47.6
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 7.8e-21 107.1 69 78.3
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 8.9e-17 93.6 263 26.6
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 1.9e-14 85.9 82 54.9
CSS0019611 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D019539 4.6e-13 81.3 79 60.8
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 1.7e-12 79.3 56 62.5
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 1.6e-10 72.8 46 63.0
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 7.6e-08 63.9 48 58.3
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 2.4e-06 58.9 42 59.5


User provided reference genes

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