Gene: Sopen11g026300
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen11g026300
- Transcript Identifier Sopen11g026300.1
- Gene Type Coding gene
- Location Spenn-ch11 : 62052195-62065030 : positive
Gene Family Information
- ID HOM05D003791
- #Genes/#Species 182/96
- Phylogenetic origin
- ID ORTHO05D004961
- #Genes/#Species 167/96
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen11g026300.1
Descriptions
- Description Might be involved in protein sorting to the vacuole. | vacuolar protein sorting 41 (VPS41) | FUNCTIONS IN: binding, nucleotide binding, zinc ion binding | INVOLVED IN: gravitropism, protein targeting to vacuole | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: WD40 repeat 2 , Zinc finger, RING-type , WD40 repeat , Vacuolar protein sorting-associated protein 41 , WD40 repeat-like-containing domain , WD40/YVTN repeat-like-containing domain , Armadillo-type fold , WD40 repeat, subgroup , Clathrin, heavy chain/VPS, 7-fold repeat
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006886 | IEA | InterPro | intracellular protein transport | |
| GO:0016192 | IEA | InterPro | vesicle-mediated transport | |
| GO:0046907 | IEA | InterPro | intracellular transport | |
| GO:0006623 | IEA | InterPro | protein targeting to vacuole | |
| GO:0009630 | ISO | PLAZA Integrative Orthology | gravitropism | AT1G08190 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IEA | InterPro | protein binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030897 | ISO | PLAZA Integrative Orthology | HOPS complex | AT1G08190 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036322 | WD40-repeat-containing domain superfamily |
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR000547 | Clathrin, heavy chain/VPS, 7-fold repeat |
| IPR016902 | Vacuolar protein sorting-associated protein 41 |
| IPR001680 | WD40 repeat |
| IPR045111 | Vacuolar protein sorting-associated protein Vps41/Vps8 |
| IPR015943 | WD40/YVTN repeat-like-containing domain superfamily |
| Mapman id | Description |
|---|---|
| 22.3.4.9.6 | Vesicle trafficking.post-Golgi trafficking.vesicle tethering.HOPS/CORVET tethering complexes.HOPS-specific component VPS41/VAM2 |