Gene: Nitab4.5_0004517g0020
General Information
Structural Information
- Species Nicotiana tabacum
- Gene Identifier Nitab4.5_0004517g0020
- Transcript Identifier Nitab4.5_0004517g0020.1
- Gene Type Coding gene
- Location Nitab4.5_0004517 : 20136-32742 : negative
Gene Family Information
- ID HOM05D003791
- #Genes/#Species 182/96
- Phylogenetic origin
- ID ORTHO05D004961
- #Genes/#Species 167/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Nitab4.5_0004517g0020.1
- SR1-identifier Nta11g15120.1
Descriptions
- Description WD40 repeat, Zinc finger, RING/FYVE/PHD-type, Clathrin, heavy chain/VPS, 7-fold repeat, Vacuolar protein sorting-associated protein 41, Tetratricopeptide-like helical, WD40/YVTN repeat-like-containing domain, WD40-repeat-containing domain
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006886 | IEA | InterPro | intracellular protein transport | |
| GO:0016192 | IEA | InterPro | vesicle-mediated transport | |
| GO:0006623 | IEA | InterPro | protein targeting to vacuole | |
| GO:0046907 | IEA | InterPro | intracellular transport | |
| GO:0009630 | ISO | PLAZA Integrative Orthology | gravitropism | AT1G08190 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IEA | InterPro | protein binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030897 | ISO | PLAZA Integrative Orthology | HOPS complex | AT1G08190 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR015943 | WD40/YVTN repeat-like-containing domain superfamily |
| IPR036322 | WD40-repeat-containing domain superfamily |
| IPR000547 | Clathrin, heavy chain/VPS, 7-fold repeat |
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR045111 | Vacuolar protein sorting-associated protein Vps41/Vps8 |
| IPR001680 | WD40 repeat |
| IPR016902 | Vacuolar protein sorting-associated protein 41 |
| Mapman id | Description |
|---|---|
| 22.3.4.9.6 | Vesicle trafficking.post-Golgi trafficking.vesicle tethering.HOPS/CORVET tethering complexes.HOPS-specific component VPS41/VAM2 |