Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen06g031150 Might be involved in protein sorting to the vacuole. | vacuolar protein sorting 41 (VPS41) | FUNCTIONS IN: binding, nucleotide binding, zinc ion binding | INVOLVED IN: gravitropism, protein targeting to vacuole | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: WD40 repeat 2 , Zinc finger, RING-type , WD40 repeat , Vacuolar protein sorting-associated protein 41 , WD40 repeat-like-containing domain , WD40/YVTN repeat-like-containing domain , Armadillo-type fold , WD40 repeat, subgroup , Clathrin, heavy chain/VPS, 7-fold repeat Spenn-ch06 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr3.3491 chr3 - View
Actinidia chinensis Actinidia24158 Lachesis_group24 + View
Actinidia chinensis Actinidia07195 Lachesis_group13 + View
Amaranthus hybridus Ah.01g004870 Vacuolar protein sorting-associated protein 41 homolog AmaHy_arrow1_Scaffold_1 + View
Aquilegia oxysepala Aqoxy1G01033 CHR01 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.53PLGZ PF00637 - Region in Clathrin and VPS (Clathrin) arahy.Tifrunner.gnm1.Arahy.13 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.DSMN0K PF00637 - Region in Clathrin and VPS (Clathrin) arahy.Tifrunner.gnm1.Arahy.03 - View
Camellia sinensis var. sinensis CSS0014729 PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Vitis vinifera] Chr13 + View
Camellia sinensis var. sinensis CSS0049530 PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Vitis vinifera] Chr11 - View
Capsicum annuum CAN.G546.67 PGAv.1.6.scaffold546 + View
Cannabis sativa CANSAT64G0962 NC_044379.1 - View
Corylus avellana Haze_23510 Similar to VPS41: Vacuolar protein sorting-associated protein 41 homolog (Solanum lycopersicum OX%3D4081) 6 - View
Coffea canephora Cc01_g10100 Vacuolar protein sorting-associated protein 41 homolog chr1 - View
Citrus clementina Ciclev10027764m.g scaffold_8 - View
Carpinus fangiana Cfa010128 Cfa04 - View
Carya illinoinensis CiPaw.14G105700 PF00637 - Region in Clathrin and VPS (Clathrin) Chr14 + View
Carya illinoinensis CiPaw.13G143800 PF00637 - Region in Clathrin and VPS (Clathrin) Chr13 - View
Cucumis melo MELO3C004827.2 vacuolar protein sorting-associated protein 41 homolog chr12 + View
Carica papaya Cpa.g.sc47.25 supercontig_47 - View
Daucus carota DCAR_018754 hypothetical protein DCARv2_Chr5 - View
Daucus carota DCAR_015496 hypothetical protein DCARv2_Chr4 + View
Daucus carota DCAR_006140 hypothetical protein DCARv2_Chr2 + View
Davidia involucrata Dinv29393 GWHABJS00000007 - View
Davidia involucrata Dinv12566 GWHABJS00000010 - View
Durio zibethinus Duzib168G1694 NW_019168159.1 - View
Durio zibethinus Duzib170G1073 NW_019167871.1 - View
Erigeron canadensis ECA233G0170 Conyza_canadensis_scaffold:1 - View
Eucalyptus grandis Eucgr.B03911 Chr02 - View
Erythranthe guttata Migut.N02533 scaffold_14 - View
Fragaria x ananassa FAN16G1431 PF00637 - Region in Clathrin and VPS (Clathrin) Fvb3-3 - View
Fragaria x ananassa FAN21G1169 PF00637//PF05577 - Region in Clathrin and VPS (Clathrin) // Serine carboxypeptidase S28 (Peptidase_S28) Fvb3-2 - View
Fragaria x ananassa FAN11G2854 PF00637 - Region in Clathrin and VPS (Clathrin) Fvb3-4 + View
Fragaria vesca FvH4_3g30370 PF00637 - Region in Clathrin and VPS (Clathrin) Fvb3 - View
Gossypium hirsutum Gohir.D09G087100 PF00637 - Region in Clathrin and VPS (Clathrin) D09 - View
Gossypium hirsutum Gohir.A09G087400 PF00637 - Region in Clathrin and VPS (Clathrin) A09 - View
Glycine max Glyma.12G083300 PTHR12616 - VACUOLAR PROTEIN SORTING VPS41 Gm12 + View
Glycine max Glyma.11G191000 PTHR12616 - VACUOLAR PROTEIN SORTING VPS41 Gm11 - View
Gossypium raimondii Gorai.006G103500 Chr06 - View
Helianthus annuus HanXRQChr13g0403561 Probable vacuolar protein sorting-associated protein 41 homolog HanXRQChr13 - View
Hydrangea macrophylla Hma1.2p1_0051F.1_g029640 Hma1.2p1_0051F.1 + View
Lupinus albus Lalb_Chr03g0027821 PF00637 - Region in Clathrin and VPS (Clathrin) Lalb_Chr03 + View
Lupinus albus Lalb_Chr22g0350471 PF00637 - Region in Clathrin and VPS (Clathrin) Lalb_Chr22 - View
Lotus japonicus Lj3g0020816 PF00637 - Region in Clathrin and VPS (Clathrin) chr3 + View
Lotus japonicus Lj3g0026116 PF00637 - Region in Clathrin and VPS (Clathrin) chr3 - View
Lonicera japonica Lj1A216G25 GWHAAZE00000001 + View
Lactuca sativa Lsat_1_v5_gn_6_42140 Lsat_1_v8_lg_6 - View
Malus domestica MD11G1151700 vacuolar protein sorting 41 Chr11 + View
Malus domestica MD03G1129800 vacuolar protein sorting 41 Chr03 + View
Manihot esculenta Manes.11G154100 Chromosome11 + View
Manihot esculenta Manes.04G011800 Chromosome04 - View
Medicago truncatula Medtr4g056480 vacuolar protein sorting protein chr4 - View
Nelumbo nucifera Nn2g13909 chr2 + View
Nelumbo nucifera Nn6g35161 chr6 - View
Nicotiana tabacum Nitab4.5_0003470g0120 Clathrin, heavy chain/VPS, 7-fold repeat, WD40-repeat-containing domain, Tetratricopeptide-like helical, WD40 repeat, WD40/YVTN repeat-like-containing domain, Vacuolar protein sorting-associated protein 41 Nitab4.5_0003470 - View
Nicotiana tabacum Nitab4.5_0000173g0320 WD40-repeat-containing domain, Vacuolar protein sorting-associated protein 41, Clathrin, heavy chain/VPS, 7-fold repeat, WD40 repeat, Zinc finger, RING/FYVE/PHD-type, WD40/YVTN repeat-like-containing domain Nitab4.5_0000173 + View
Olea europaea Oeu035522.1 chr11 + View
Olea europaea Oeu000610.1 scaffold1004 - View
Petunia axillaris Peaxi162Scf00150g00213 vacuolar protein sorting 41 Peaxi162Scf00150 + View
Punica granatum PGR102G1149 NC_045129.1 + View
Prunus persica Prupe.6G114800 PTHR12616 - VACUOLAR PROTEIN SORTING VPS41 Pp06 + View
Pisum sativum Psat7g191520 Region in Clathrin and VPS chr7LG7 - View
Papaver somniferum PSO063G7392 NC_039364.1 + View
Populus trichocarpa Potri.009G002400 PF00637 - Region in Clathrin and VPS (Clathrin) Chr09 - View
Phaseolus vulgaris Phvul.011G088100 PTHR12616 - VACUOLAR PROTEIN SORTING VPS41 Chr11 + View
Quercus lobata QL01p014586 1 - View
Rosa chinensis RcHm_v2.0_Chr5g0056291 RcHm_v2.0_Chr5 - View
Rhododendron simsii Rhsim13G0102400 chr13 + View
Striga asiatica SGA_v2.0_scaffold83G26445 scaffold83 - View
Salvia bowleyana SalBow3G1938 GWHASIU00000006 - View
Salix brachista Sabra04G0148600 GWHAAZH00000004 + View
Salix brachista Sabra09G0001100 GWHAAZH00000009 - View
Sechium edule Sed0022437 LG03 + View
Solanum lycopersicum Solyc11g066560.3 Vacuolar protein sorting-associated protein 41 homolog (AHRD V3.3 *** A0A2G2YHK9_CAPAN) SL4.0ch11 + View
Solanum lycopersicum Solyc06g074740.3 LEU86662 VPS41 SL4.0ch06 - View
Trochodendron aralioides TAR369G0287 group18 + View
Trochodendron aralioides TAR623G0647 group7 - View
Theobroma cacao Thecc.09G295700 Vacuolar protein sorting-associated protein 41 Chromosome_9 - View
Tarenaya hassleriana THA.LOC104800566 vacuolar protein sorting-associated protein 41 homolog NW_010969548.1 - View
Tripterygium wilfordii TWI75G0356 NC_052253.1 + View
Tripterygium wilfordii TWI79G0622 NC_052238.1 + View
Vaccinium macrocarpon vmacro03244 Similar to VPS41: Vacuolar protein sorting-associated protein 41 homolog (Solanum lycopersicum OX%3D4081) chr9_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1127G0886 CM024076.1 + View
Vitis vinifera GSVIVG01031443001 chr6 + View