Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 3686.0 1875 100.0
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 3064.2 1881 83.1
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 2851.2 1887 78.6
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 2826.6 1786 81.0
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2174.1 1917 59.4
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2152.9 1918 59.6
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 0.0e+00 2141.3 1114 97.6
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2097.8 1898 58.3
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 2088.2 1894 58.3
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 2082.8 1921 57.2
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 0.0e+00 2080.1 1094 95.3
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 2057.3 1922 56.3
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 2038.8 1891 56.5
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 2025.0 1920 55.7
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 2023.8 1921 56.0
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 2009.2 1887 55.7
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 1983.8 1932 54.7
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1983.8 1841 56.5
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 1982.6 1922 55.0
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 1980.7 1970 54.6
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 1980.3 1919 54.8
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 1976.1 1919 55.0
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 1975.3 1926 54.8
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 1950.3 1936 53.9
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 1939.5 1931 53.7
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1935.2 1921 53.8
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 1934.8 1924 54.1
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 1929.1 1923 54.0
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1926.8 1921 53.9
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 1920.6 1919 53.6
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1915.6 1921 53.5
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 1912.1 1899 54.0
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1908.3 1919 53.3
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 1902.9 1932 53.0
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 1902.5 1923 53.2
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1901.3 1956 52.7
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1891.3 1921 53.6
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 1890.5 1913 53.2
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 1888.2 1789 56.2
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 1880.9 1918 52.6
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 1880.1 1934 52.1
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1877.4 1946 52.9
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 1867.4 1926 51.9
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 1867.0 1921 52.7
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1862.4 1905 52.8
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 1860.9 1923 52.6
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1859.3 1914 52.4
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 1852.8 1966 51.3
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1851.6 1941 52.3
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1850.9 1911 52.3
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 1849.7 1917 52.3
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 1848.2 1934 52.2
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1842.8 1912 52.0
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1823.5 1941 52.0
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 1807.0 1918 52.0
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 1806.6 1924 50.9
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 1804.3 1918 51.8
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 1796.9 2037 49.1
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 1793.1 1923 50.2
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 1790.8 1922 50.7
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 1782.3 1936 50.9
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 1780.8 1861 52.3
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1775.4 2093 48.1
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1761.5 1919 50.4
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 1760.0 1944 50.3
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 1752.3 1909 51.0
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1746.1 1917 49.3
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1730.3 2411 42.9
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1726.1 1935 49.8
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1725.7 1932 49.6
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 1718.4 1912 49.7
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 1709.1 1932 49.4
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 1703.7 1911 49.4
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 1689.1 1913 49.2
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 1687.9 1909 49.4
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1682.2 1906 47.9
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 1681.0 1911 49.3
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1679.1 1906 47.8
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1673.7 1902 48.9
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1672.9 1929 49.3
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1668.7 1907 49.7
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1665.2 1907 48.9
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 1662.1 1911 48.9
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1658.3 1918 49.0
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1654.4 1922 48.1
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1653.6 1902 48.6
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1652.9 1901 48.5
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1652.5 1900 48.5
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1644.4 1915 48.3
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1620.5 1833 48.7
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1612.0 1916 46.8
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1604.3 1974 46.4
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1559.3 1903 47.3
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 1558.9 1856 46.4
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1515.4 1323 58.4
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 0.0e+00 1491.1 1937 43.2
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1412.9 1215 59.0
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 0.0e+00 1399.8 1949 42.8
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 0.0e+00 1397.5 1700 46.4
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 0.0e+00 1387.9 1933 42.2
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 0.0e+00 1372.5 748 94.4
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 0.0e+00 1321.6 1581 46.2
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 0.0e+00 1262.7 1935 39.1
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1083.6 1672 39.4
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 1.2e-304 1050.8 2069 34.7
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 4.1e-292 1009.2 2048 33.6
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 5.9e-291 1005.4 889 58.7
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 1.1e-276 958.0 1985 33.2
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 4.9e-261 906.0 1097 44.7
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 6.8e-255 885.6 1912 32.3
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 1.8e-186 658.3 896 41.3
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 1.2e-126 459.5 694 39.8
Dinv12246 Davidia involucrata HOM05D001072 ORTHO05D006807 8.5e-72 277.3 256 56.2
Dinv12247 Davidia involucrata HOM05D001072 ORTHO05D006807 9.7e-68 263.8 173 77.5
Psat0s2465g0160 Pisum sativum HOM05D001072 ORTHO05D006807 1.5e-63 250.0 171 73.7
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 6.3e-59 234.6 557 30.3
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 1.0e-56 227.3 220 56.4
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 5.7e-52 211.5 218 45.9
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 9.8e-52 210.7 637 28.4
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 9.2e-50 204.1 218 44.5
MBI03_g13045_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 2.5e-47 196.1 134 73.9
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 8.6e-40 171.0 361 30.5
Psat4g121040 Pisum sativum HOM05D001072 ORTHO05D006807 2.9e-35 156.0 101 73.3
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 5.0e-32 145.2 161 46.0
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 7.5e-28 131.3 209 31.6
Lj2A1095G45 Lonicera japonica HOM05D001072 ORTHO05D006807 1.9e-26 126.7 125 56.0
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 2.3e-24 119.8 95 58.9
Ah.09g228980 Amaranthus hybridus HOM05D001072 ORTHO05D006807 3.0e-24 119.4 103 60.2
RcHm_v2.0_Chr5g0061981 Rosa chinensis HOM05D001072 ORTHO05D006807 1.1e-21 110.9 191 35.6
Psat3g023200 Pisum sativum HOM05D001072 ORTHO05D006807 6.8e-21 108.2 82 64.6
TPR.G25341 Trifolium pratense HOM05D001072 ORTHO05D006807 1.6e-17 97.1 83 65.1
Ca_27012_v3 Cicer arietinum L. HOM05D000103 ORTHO05D006807 3.5e-17 95.9 183 30.6
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 8.1e-14 84.7 107 40.2
Cpa.g.sc2.314 Carica papaya HOM05D001072 ORTHO05D006807 6.9e-13 81.6 127 35.4
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 2.0e-12 80.1 64 54.7
Psat0s3437g0080 Pisum sativum HOM05D001072 ORTHO05D006807 1.7e-08 67.0 84 44.0


User provided reference genes

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