Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g043020 Solanum pennellii HOM05D000246 ORTHO05D037723 1.0e-108 396.7 204 100.0
Solyc01g099500.1 Solanum lycopersicum HOM05D000246 ORTHO05D037723 1.2e-48 197.2 104 95.2
Sopen01g043000 Solanum pennellii HOM05D000246 ORTHO05D007179 3.1e-44 182.6 277 45.8
Solyc01g099460.3 Solanum lycopersicum HOM05D000246 ORTHO05D007179 4.1e-44 182.2 277 45.8
CAN.G1652.4 Capsicum annuum HOM05D000246 ORTHO05D007179 2.6e-43 179.5 276 44.2
Nitab4.5_0008329g0030 Nicotiana tabacum HOM05D000246 ORTHO05D007179 1.4e-41 173.7 277 43.3
Nitab4.5_0002344g0100 Nicotiana tabacum HOM05D000246 ORTHO05D007179 2.5e-41 172.9 277 43.3
Peaxi162Scf00037g00932 Petunia axillaris HOM05D000246 ORTHO05D007179 6.7e-31 138.3 276 38.8
Dinv40315 Davidia involucrata HOM05D000246 ORTHO05D007179 1.2e-27 127.5 104 67.3
vmacro04965 Vaccinium macrocarpon HOM05D000246 ORTHO05D007179 2.0e-27 126.7 104 65.4
Actinidia05681 Actinidia chinensis HOM05D000246 ORTHO05D007179 4.5e-27 125.6 104 65.4
Oeu012115.1 Olea europaea HOM05D000246 ORTHO05D007179 4.5e-27 125.6 105 64.8
Rhsim07G0187000 Rhododendron simsii HOM05D000246 ORTHO05D007179 5.9e-27 125.2 104 64.4
GSVIVG01031124001 Vitis vinifera HOM05D001472 ORTHO05D002655 7.7e-27 124.8 104 64.4
arahy.Tifrunner.gnm1.ann1.G0LK44 Arachis hypogaea HOM05D000246 ORTHO05D007179 1.3e-26 124.0 105 62.9
CiPaw.08G162700 Carya illinoinensis HOM05D000246 ORTHO05D007179 1.3e-26 124.0 104 65.4
Lj5A421T63 Lonicera japonica HOM05D000246 ORTHO05D007179 1.3e-26 124.0 104 64.4
Lj5A431G15 Lonicera japonica HOM05D000246 ORTHO05D007179 1.3e-26 124.0 104 64.4
Gohir.A11G267000 Gossypium hirsutum HOM05D000246 ORTHO05D007179 1.7e-26 123.6 104 65.4
Gohir.D11G277100 Gossypium hirsutum HOM05D000246 ORTHO05D007179 1.7e-26 123.6 104 65.4
Gorai.007G299200 Gossypium raimondii HOM05D000246 ORTHO05D007179 1.7e-26 123.6 104 65.4
QL03p011605 Quercus lobata HOM05D000246 ORTHO05D007179 1.7e-26 123.6 104 63.5
QL03p021635 Quercus lobata HOM05D000246 ORTHO05D007179 1.7e-26 123.6 104 63.5
HanXRQChr03g0072511 Helianthus annuus HOM05D000246 ORTHO05D007179 2.2e-26 123.2 104 64.4
Manes.08G118800 Manihot esculenta HOM05D000246 ORTHO05D007179 2.9e-26 122.9 104 63.5
Prupe.6G321800 Prunus persica HOM05D000246 ORTHO05D007179 2.9e-26 122.9 104 63.5
Thecc.05G311900 Theobroma cacao HOM05D000246 ORTHO05D007179 2.9e-26 122.9 104 64.4
arahy.Tifrunner.gnm1.ann1.K95L4M Arachis hypogaea HOM05D000246 ORTHO05D007179 5.0e-26 122.1 105 61.9
CANSAT54G2417 Cannabis sativa HOM05D000246 ORTHO05D007179 6.5e-26 121.7 104 61.5
Haze_04155 Corylus avellana HOM05D000246 ORTHO05D007179 6.5e-26 121.7 104 64.4
MD04G1201600 Malus domestica HOM05D000246 ORTHO05D007179 6.5e-26 121.7 104 62.5
Phvul.007G196600 Phaseolus vulgaris HOM05D000246 ORTHO05D007179 8.5e-26 121.3 104 60.6
Atru.chr2.19 Acer truncatum HOM05D000246 ORTHO05D007179 1.1e-25 120.9 104 62.5
ClCG02G015470 Citrullus lanatus HOM05D000246 ORTHO05D007179 1.1e-25 120.9 104 62.5
Ciclev10000234m.g Citrus clementina HOM05D000246 ORTHO05D007179 1.1e-25 120.9 104 62.5
MELO3C004226.2 Cucumis melo HOM05D000246 ORTHO05D007179 1.1e-25 120.9 104 62.5
CsaV3_2G006600 Cucumis sativus L. HOM05D000246 ORTHO05D007179 1.1e-25 120.9 104 62.5
RcHm_v2.0_Chr3g0455521 Rosa chinensis HOM05D000246 ORTHO05D007179 1.1e-25 120.9 104 63.5
Sed0014533 Sechium edule HOM05D000246 ORTHO05D007179 1.1e-25 120.9 104 62.5
VMungo0720G1583 Vigna mungo HOM05D000246 ORTHO05D007179 1.1e-25 120.9 104 60.6
ECA240G0991 Erigeron canadensis HOM05D000246 ORTHO05D007179 1.4e-25 120.6 104 62.5
PSO170G0679 Papaver somniferum HOM05D000246 ORTHO05D007179 1.4e-25 120.6 104 61.5
EL10Ac4g09931 Beta vulgaris HOM05D000246 ORTHO05D007179 2.5e-25 119.8 104 62.5
Cpa.g.sc48.83 Carica papaya HOM05D000246 ORTHO05D007179 2.5e-25 119.8 104 60.6
Cfa006619 Carpinus fangiana HOM05D000246 ORTHO05D007179 2.5e-25 119.8 104 63.5
AUR62005191 Chenopodium quinoa HOM05D000246 ORTHO05D007179 2.5e-25 119.8 104 62.5
Lsat_1_v5_gn_9_123801 Lactuca sativa HOM05D000246 ORTHO05D007179 2.5e-25 119.8 101 63.4
Lalb_Chr21g0310611 Lupinus albus HOM05D000246 ORTHO05D007179 2.5e-25 119.8 104 62.5
MBI19_g30059_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D007179 2.5e-25 119.8 104 59.6
Sabra05G0031700 Salix brachista HOM05D000359 ORTHO05D007179 2.5e-25 119.8 104 63.5
Glyma.20G236000 Glycine max HOM05D000246 ORTHO05D007179 3.2e-25 119.4 104 59.6
Medtr1g083250 Medicago truncatula HOM05D000246 ORTHO05D007179 3.2e-25 119.4 105 60.0
TPR.G6096 Trifolium pratense HOM05D000246 ORTHO05D007179 4.2e-25 119.0 105 61.0
Eucgr.H04508 Eucalyptus grandis HOM05D000246 ORTHO05D007179 5.5e-25 118.6 104 61.5
Eucgr.L01167 Eucalyptus grandis HOM05D000246 ORTHO05D007179 5.5e-25 118.6 104 61.5
FAN05G3600 Fragaria x ananassa HOM05D000246 ORTHO05D007179 5.5e-25 118.6 104 62.5
PSO210G2254 Papaver somniferum HOM05D000246 ORTHO05D007179 5.5e-25 118.6 104 60.6
Potri.005G026400 Populus trichocarpa HOM05D000246 ORTHO05D007179 5.5e-25 118.6 104 62.5
Sc09g0003000 Simmondsia chinensis HOM05D000246 ORTHO05D007179 5.5e-25 118.6 104 59.6
FvH4_6g06440 Fragaria vesca HOM05D000246 ORTHO05D007179 7.2e-25 118.2 104 61.5
FAN14G0626 Fragaria x ananassa HOM05D000246 ORTHO05D007179 7.2e-25 118.2 104 61.5
Psat6g150320 Pisum sativum HOM05D000246 ORTHO05D007179 7.2e-25 118.2 105 60.0
Nn3g21421 Nelumbo nucifera HOM05D000246 ORTHO05D007179 9.4e-25 117.9 104 60.6
Sp2g20840 Schrenkiella parvula HOM05D000246 ORTHO05D007179 9.4e-25 117.9 106 58.5
Aqoxy2G03005 Aquilegia oxysepala HOM05D000246 ORTHO05D007179 1.2e-24 117.5 104 59.6
PGR031G3950 Punica granatum HOM05D000246 ORTHO05D007179 1.2e-24 117.5 104 60.6
AUR62000778 Chenopodium quinoa HOM05D000246 ORTHO05D007179 2.1e-24 116.7 104 61.5
Ca_10124_v3 Cicer arietinum L. HOM05D000246 ORTHO05D007179 2.1e-24 116.7 104 60.6
TAR633G0108 Trochodendron aralioides HOM05D000246 ORTHO05D007179 2.1e-24 116.7 104 59.6
Cc00_g10440 Coffea canephora HOM05D000246 ORTHO05D007179 2.7e-24 116.3 104 61.5
TWI56G0873 Tripterygium wilfordii HOM05D000246 ORTHO05D007179 2.7e-24 116.3 104 57.7
A06p37370 Brassica napus HOM05D000246 ORTHO05D007179 4.7e-24 115.5 104 57.7
C07p41090 Brassica napus HOM05D000246 ORTHO05D007179 4.7e-24 115.5 104 57.7
BolC7t44636H Brassica oleracea HOM05D000246 ORTHO05D007179 4.7e-24 115.5 104 57.7
BraA06t26661Z Brassica rapa HOM05D000246 ORTHO05D007179 4.7e-24 115.5 104 57.7
DCAR_003347 Daucus carota HOM05D000246 ORTHO05D007179 4.7e-24 115.5 105 58.1
Migut.B01029 Erythranthe guttata HOM05D000246 ORTHO05D007179 4.7e-24 115.5 104 59.6
FAN02G0914 Fragaria x ananassa HOM05D000246 ORTHO05D007179 4.7e-24 115.5 104 60.6
Hund21703 Selenicereus undatus HOM05D000246 ORTHO05D007179 4.7e-24 115.5 104 59.6
Thhalv10003644m.g Eutrema salsugineum HOM05D000246 ORTHO05D007179 1.4e-23 114.0 104 57.7
ATR0210G017 Amborella trichopoda HOM05D000246 ORTHO05D007179 1.8e-23 113.6 104 58.7
AL6G39350 Arabidopsis lyrata HOM05D000246 ORTHO05D007179 3.9e-23 112.5 104 56.7
AT5G27680 Arabidopsis thaliana HOM05D000246 ORTHO05D007179 3.9e-23 112.5 104 56.7
Aa31LG11G9420 Aethionema arabicum HOM05D000246 ORTHO05D007179 5.2e-23 112.1 104 58.7
Carub.0006s2490 Capsella rubella HOM05D000246 ORTHO05D007179 5.2e-23 112.1 104 55.8
CARHR186200 Cardamine hirsuta HOM05D000246 ORTHO05D007179 5.2e-23 112.1 104 55.8
Eucgr.F00584 Eucalyptus grandis HOM05D000246 ORTHO05D007179 5.2e-23 112.1 103 59.2
Zm00001eb354210 Zea mays HOM05D000246 ORTHO05D007179 6.7e-23 111.7 104 58.7
Os05g0150600 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D007179 8.8e-23 111.3 104 57.7
CDE01G0252 Ceratophyllum demersum HOM05D000246 ORTHO05D007179 5.7e-22 108.6 104 56.7
SHI18109 Sapria himalayana HOM05D000246 ORTHO05D007179 9.7e-22 107.8 104 57.7
SEGI_40367 Sequoiadendron giganteum HOM05D000246 ORTHO05D007179 1.3e-21 107.5 104 55.8
CSS0023091 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D007179 2.2e-21 106.7 59 83.1
CSS0043712 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D007179 2.2e-21 106.7 59 83.1
Lj5g0018456 Lotus japonicus HOM05D000246 ORTHO05D007179 8.2e-21 104.8 104 54.8
Pp3c20_2130 Physcomitrium patens HOM05D000246 ORTHO05D007179 9.1e-20 101.3 104 52.9
Pp3c23_17960 Physcomitrium patens HOM05D000246 ORTHO05D007179 3.5e-19 99.4 104 51.9
Solyc02g088430.1 Solanum lycopersicum HOM05D000246 ORTHO05D007179 2.5e-17 93.2 101 56.4
RcHm_v2.0_Chr6g0295551 Rosa chinensis HOM05D000246 ORTHO05D007179 1.2e-16 90.9 53 79.2
Sopen01g042990 Solanum pennellii HOM05D000246 ORTHO05D037723 2.0e-11 73.6 50 74.0
Sopen01g043010 Solanum pennellii HOM05D036645 ORTHO05D051249 1.3e-10 70.9 64 65.6
Sopen02g033110 Solanum pennellii HOM05D000246 ORTHO05D007179 8.5e-10 68.2 76 56.6
Cre12.g490150 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D009140 1.1e-09 67.8 104 39.4
MBI15_g11744_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D009140 3.2e-09 66.2 100 38.0
DCAR_004778 Daucus carota HOM05D000246 ORTHO05D009140 4.2e-09 65.9 86 40.7
SMO367G0949 Selaginella moellendorffii HOM05D000246 ORTHO05D009140 5.5e-09 65.5 104 38.5
Duzib177G0836 Durio zibethinus HOM05D000246 ORTHO05D007179 7.2e-09 65.1 88 46.6
Atru.chr10.2369 Acer truncatum HOM05D000246 ORTHO05D009140 1.2e-08 64.3 116 31.9
Zm00001eb330800 Zea mays HOM05D000246 ORTHO05D009140 1.2e-08 64.3 104 35.6
CBR_g39230 Chara braunii HOM05D000246 ORTHO05D009140 1.6e-08 63.9 107 40.2
MELO3C008825.2 Cucumis melo HOM05D000246 ORTHO05D009140 1.6e-08 63.9 104 36.5
CsaV3_4G012100 Cucumis sativus L. HOM05D000246 ORTHO05D009140 2.1e-08 63.5 104 35.6
AagrBONN_evm.TU.Sc2ySwM_228.2819 Anthoceros agrestis HOM05D000246 ORTHO05D009140 2.7e-08 63.2 104 33.7
Sopen09g012230 Solanum pennellii HOM05D000246 ORTHO05D009140 2.7e-08 63.2 118 36.4
Aqoxy5G02490 Aquilegia oxysepala HOM05D000246 ORTHO05D009140 3.6e-08 62.8 134 32.1
ATR1127G158 Amborella trichopoda HOM05D000246 ORTHO05D009140 4.7e-08 62.4 104 34.6
MELO3C008835.2 Cucumis melo HOM05D000246 ORTHO05D009140 4.7e-08 62.4 104 35.6
MBI15_g38918_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D009140 4.7e-08 62.4 100 38.0
MELO3C008833.2 Cucumis melo HOM05D000246 ORTHO05D009140 6.1e-08 62.0 104 34.6
CsaV3_4G012080 Cucumis sativus L. HOM05D000246 ORTHO05D009140 6.1e-08 62.0 104 35.6
CsaV3_4G012090 Cucumis sativus L. HOM05D000246 ORTHO05D009140 6.1e-08 62.0 104 34.6
Migut.D00789 Erythranthe guttata HOM05D000246 ORTHO05D009140 6.1e-08 62.0 143 32.2
Os07g0681600 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D009140 6.1e-08 62.0 104 34.6
Mapoly0130s0046 Marchantia polymorpha HOM05D000246 ORTHO05D009140 8.0e-08 61.6 104 34.6
Sed0012503 Sechium edule HOM05D000246 ORTHO05D009140 8.0e-08 61.6 104 34.6
COL.COLO4_10505 Corchorus olitorius HOM05D000246 ORTHO05D007179 1.0e-07 61.2 73 42.5
Pp3c12_1610 Physcomitrium patens HOM05D000246 ORTHO05D009140 1.0e-07 61.2 109 32.1
ECA248G0782 Erigeron canadensis HOM05D000246 ORTHO05D009140 1.4e-07 60.8 104 35.6
SGA_v2.0_scaffold158G37461 Striga asiatica HOM05D000246 ORTHO05D009140 1.4e-07 60.8 143 30.1
TWI74G1630 Tripterygium wilfordii HOM05D000246 ORTHO05D009140 1.4e-07 60.8 151 29.8
HPP92_014358 Vanilla planifolia HOM05D000246 ORTHO05D009140 1.4e-07 60.8 135 31.1
HanXRQChr01g0013541 Helianthus annuus HOM05D000246 ORTHO05D009140 1.8e-07 60.5 104 34.6
Solyc09g018710.2 Solanum lycopersicum HOM05D000246 ORTHO05D009140 1.8e-07 60.5 136 32.4
Lj1A109T41 Lonicera japonica HOM05D000246 ORTHO05D009140 2.3e-07 60.1 104 33.7
Rhsim13G0056800 Rhododendron simsii HOM05D000246 ORTHO05D009140 2.3e-07 60.1 104 33.7
CANSAT54G0602 Cannabis sativa HOM05D000246 ORTHO05D009140 3.0e-07 59.7 114 34.2
SGA_v2.0_scaffold158G37464 Striga asiatica HOM05D000246 ORTHO05D009140 3.0e-07 59.7 104 34.6
EL10Ac4g08389 Beta vulgaris HOM05D000246 ORTHO05D009140 4.0e-07 59.3 167 27.5
MCO09G327 Micromonas commoda HOM05D000246 ORTHO05D009140 4.0e-07 59.3 109 34.9
vmacro02858 Vaccinium macrocarpon HOM05D000246 ORTHO05D009140 4.0e-07 59.3 104 31.7
CAN.G478.17 Capsicum annuum HOM05D000246 ORTHO05D009140 5.2e-07 58.9 136 30.9
Prupe.6G037500 Prunus persica HOM05D000246 ORTHO05D009140 5.2e-07 58.9 175 29.1
HPP92_010689 Vanilla planifolia HOM05D000246 ORTHO05D007179 5.2e-07 58.9 37 64.9
AUR62037584 Chenopodium quinoa HOM05D000246 ORTHO05D009140 6.8e-07 58.5 104 32.7
Ciclev10001180m.g Citrus clementina HOM05D000246 ORTHO05D009140 6.8e-07 58.5 104 33.7
Dinv17919 Davidia involucrata HOM05D000246 ORTHO05D009140 6.8e-07 58.5 104 32.7
MSTRG.18522 Avicennia marina HOM05D000246 ORTHO05D009140 1.2e-06 57.8 143 29.4
CSS0047282 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D009140 1.2e-06 57.8 104 32.7
Cc01_g15610 Coffea canephora HOM05D000246 ORTHO05D009140 1.2e-06 57.8 189 27.0
MD03G1046200 Malus domestica HOM05D000246 ORTHO05D009140 1.2e-06 57.8 175 27.4
Peaxi162Scf00293g00723 Petunia axillaris HOM05D000246 ORTHO05D009140 1.2e-06 57.8 104 33.7
Actinidia23144 Actinidia chinensis HOM05D000246 ORTHO05D009140 1.5e-06 57.4 108 33.3
Lsat_1_v5_gn_5_176881 Lactuca sativa HOM05D000246 ORTHO05D009140 1.5e-06 57.4 104 31.7
Lalb_Chr15g0085521 Lupinus albus HOM05D000246 ORTHO05D009140 1.5e-06 57.4 104 33.7
Pp3c2_1760 Physcomitrium patens HOM05D000246 ORTHO05D005396 1.5e-06 57.4 112 32.1
RcHm_v2.0_Chr5g0074051 Rosa chinensis HOM05D000246 ORTHO05D009140 1.5e-06 57.4 136 29.4
Haze_24501 Corylus avellana HOM05D000246 ORTHO05D009140 2.0e-06 57.0 116 33.6
RcHm_v2.0_Chr5g0074061 Rosa chinensis HOM05D000246 ORTHO05D009140 2.0e-06 57.0 143 30.8
GSVIVG01024519001 Vitis vinifera HOM05D000246 ORTHO05D009140 2.0e-06 57.0 104 32.7
Hund18366 Selenicereus undatus HOM05D000246 ORTHO05D009140 2.6e-06 56.6 104 32.7
AL1G21910 Arabidopsis lyrata HOM05D000246 ORTHO05D005396 3.4e-06 56.2 115 33.0
AT1G10930 Arabidopsis thaliana HOM05D000246 ORTHO05D005396 3.4e-06 56.2 115 33.0
FvH4_3g41250 Fragaria vesca HOM05D000246 ORTHO05D009140 3.4e-06 56.2 143 30.1
FAN16G3185 Fragaria x ananassa HOM05D000246 ORTHO05D009140 3.4e-06 56.2 143 30.1
QL01p023430 Quercus lobata HOM05D000246 ORTHO05D009140 3.4e-06 56.2 175 29.7
CARHR011150 Cardamine hirsuta HOM05D000246 ORTHO05D005396 4.4e-06 55.8 114 30.7
FAN11G0500 Fragaria x ananassa HOM05D000246 ORTHO05D009140 4.4e-06 55.8 143 29.4
Psat5g146240 Pisum sativum HOM05D000246 ORTHO05D009140 4.4e-06 55.8 104 33.7
TWI73G0392 Tripterygium wilfordii HOM05D000246 ORTHO05D002923 4.4e-06 55.8 112 35.7
Actinidia11642 Actinidia chinensis HOM05D000246 ORTHO05D009140 5.7e-06 55.5 104 33.7
Lsat_1_v5_gn_7_73480 Lactuca sativa HOM05D000246 ORTHO05D002923 5.7e-06 55.5 88 37.5
Manes.18G122300 Manihot esculenta HOM05D000246 ORTHO05D009140 5.7e-06 55.5 104 32.7
Oeu020449.1 Olea europaea HOM05D000246 ORTHO05D009140 5.7e-06 55.5 104 33.7
Rhsim11G0127500 Rhododendron simsii HOM05D000246 ORTHO05D005396 5.7e-06 55.5 91 35.2
Aa31LG1G3940 Aethionema arabicum HOM05D000246 ORTHO05D005396 7.5e-06 55.1 114 30.7
PSO017G1629 Papaver somniferum HOM05D000246 ORTHO05D005396 7.5e-06 55.1 93 33.3
TPR.G37424 Trifolium pratense HOM05D000246 ORTHO05D009140 7.5e-06 55.1 136 29.4
TAR624G1231 Trochodendron aralioides HOM05D000246 ORTHO05D005396 7.5e-06 55.1 93 33.3
TAR633G0607 Trochodendron aralioides HOM05D000246 ORTHO05D009140 7.5e-06 55.1 104 33.7
Nitab4.5_0002399g0080 Nicotiana tabacum HOM05D000246 ORTHO05D009140 9.8e-06 54.7 151 27.2


User provided reference genes

Program Settings