Gene: Solyc01g099460.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc01g099460.3
- Transcript Identifier Solyc01g099460.3.1
- Gene Type Coding gene
- Location SL4.0ch01 : 81965683-81975004 : positive
Gene Family Information
- ID HOM05D000246
- #Genes/#Species 1713/100
- Phylogenetic origin
- ID ORTHO05D007179
- #Genes/#Species 133/85
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Solyc01g099460.3.1
- uniprot A0A3Q7ENF2
- gene_id Solyc01g099460
Descriptions
- Description ATP-dependent DNA helicase (AHRD V3.3 *** A0A2G2XW06_CAPAN)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000724 | IBA | GOA Database | double-strand break repair via homologous recombination | |
| GO:0032508 | IBA | GOA Database | DNA duplex unwinding | |
| GO:0006310 | IBA IEA | GOA Database | DNA recombination | |
| GO:0006310 | IEA | InterPro | DNA recombination | |
| GO:0006281 | IBA | GOA Database | DNA repair | |
| GO:0006268 | IBA | GOA Database | DNA unwinding involved in DNA replication |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009378 | IBA | GOA Database | four-way junction helicase activity | |
| GO:0043138 | IBA | GOA Database | 3'-5' DNA helicase activity | |
| GO:0004386 | IEA | GOA Database | helicase activity | |
| GO:0004386 | IEA | InterPro | helicase activity | |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0005515 | IEA | InterPro | protein binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IBA | GOA Database | nucleus | |
| GO:0005737 | IBA | GOA Database | cytoplasm | |
| GO:0005694 | IBA | GOA Database | chromosome |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR004589 | DNA helicase, ATP-dependent, RecQ type |
| IPR032284 | ATP-dependent DNA helicase RecQ, zinc-binding domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR036388 | Winged helix-like DNA-binding domain superfamily |
| IPR001650 | Helicase, C-terminal |
| IPR011545 | DEAD/DEAH box helicase domain |
| IPR009060 | UBA-like superfamily |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |