Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 1.8e-124 449.5 276 100.0
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 5.9e-123 444.5 275 98.5
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 8.6e-90 334.3 257 84.8
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 1.6e-88 330.1 284 76.4
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 1.2e-80 303.9 304 66.1
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 6.9e-79 298.1 297 69.7
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 1.3e-77 293.9 292 72.9
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.3e-77 293.9 293 70.0
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.3e-77 293.9 284 74.6
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.1e-76 290.8 294 69.7
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 1.1e-76 290.8 293 70.0
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 2.4e-76 289.7 297 68.7
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 7.1e-76 288.1 286 71.7
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 9.3e-76 287.7 302 67.9
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 4.6e-75 285.4 285 75.8
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 6.0e-75 285.0 283 75.3
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 1.0e-74 284.3 302 65.6
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 1.3e-74 283.9 276 77.2
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 6.6e-74 281.6 166 87.3
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 8.7e-74 281.2 298 69.8
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 3.3e-73 279.3 247 73.3
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 4.3e-73 278.9 252 66.7
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 5.6e-73 278.5 228 71.9
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 5.6e-73 278.5 206 75.2
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 1.3e-72 277.3 286 71.7
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 2.1e-72 276.6 290 66.9
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 3.6e-72 275.8 284 70.4
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 4.8e-72 275.4 163 87.7
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 1.1e-71 274.2 292 68.2
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 2.4e-71 273.1 287 70.7
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 4.0e-71 272.3 290 71.0
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 5.3e-71 271.9 167 85.0
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 6.9e-71 271.6 276 70.7
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 1.5e-70 270.4 227 75.8
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 1.5e-70 270.4 227 75.8
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 1.5e-70 270.4 194 77.8
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 2.0e-70 270.0 210 71.9
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 3.4e-70 269.2 293 70.3
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 4.5e-70 268.9 291 72.2
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 7.6e-70 268.1 164 84.1
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 7.6e-70 268.1 286 71.0
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 1.3e-69 267.3 290 69.3
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.3e-69 267.3 286 70.3
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 1.3e-69 267.3 289 71.6
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 1.7e-69 266.9 197 77.2
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 2.2e-69 266.5 234 70.9
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 2.2e-69 266.5 244 70.5
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 4.9e-69 265.4 258 65.1
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 6.4e-69 265.0 286 70.3
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 6.4e-69 265.0 292 69.9
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 6.4e-69 265.0 287 70.7
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 6.4e-69 265.0 175 81.1
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 8.4e-69 264.6 182 79.1
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 1.1e-68 264.2 286 63.6
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 1.1e-68 264.2 242 66.5
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.1e-68 264.2 167 83.8
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 1.4e-68 263.8 238 73.5
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.9e-68 263.5 301 61.8
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 1.9e-68 263.5 175 80.0
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 3.2e-68 262.7 176 80.7
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 4.2e-68 262.3 277 71.1
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 4.2e-68 262.3 244 66.4
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 5.4e-68 261.9 152 89.5
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 2.1e-67 260.0 152 88.2
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 2.1e-67 260.0 151 89.4
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 2.7e-67 259.6 295 70.2
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 4.6e-67 258.8 179 77.7
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 6.0e-67 258.5 152 88.2
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 6.0e-67 258.5 178 79.2
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 6.0e-67 258.5 280 68.6
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 7.9e-67 258.1 154 84.4
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.0e-66 257.7 195 74.9
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.0e-66 257.7 143 92.3
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 1.0e-66 257.7 154 83.8
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 1.3e-66 257.3 221 69.7
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 1.3e-66 257.3 309 62.1
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.8e-66 256.9 249 69.5
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.8e-66 256.9 190 76.3
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.8e-66 256.9 190 76.3
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 2.3e-66 256.5 230 70.9
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 3.0e-66 256.1 204 72.5
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 3.9e-66 255.8 248 70.2
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 6.7e-66 255.0 285 68.1
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 8.7e-66 254.6 230 71.3
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 1.5e-65 253.8 195 75.9
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 1.5e-65 253.8 195 75.9
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 1.5e-65 253.8 195 75.9
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 3.3e-65 252.7 183 78.1
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 7.4e-65 251.5 233 66.5
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 9.6e-65 251.1 221 72.4
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.3e-64 250.8 289 59.9
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.6e-64 250.4 237 70.9
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 1.6e-64 250.4 292 63.7
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.6e-64 250.4 292 63.7
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 2.1e-64 250.0 206 72.3
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 2.1e-64 250.0 206 72.3
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 2.1e-64 250.0 153 85.0
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 2.1e-64 250.0 279 68.1
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 2.8e-64 249.6 192 76.0
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 2.8e-64 249.6 192 76.0
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 3.7e-64 249.2 146 88.4
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 4.8e-64 248.8 189 75.7
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.8e-64 248.8 154 83.1
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.8e-64 248.8 154 83.1
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 4.8e-64 248.8 277 67.9
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 5.3e-63 245.4 166 77.7
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 5.3e-63 245.4 241 68.9
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 5.3e-63 245.4 179 74.9
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 6.9e-63 245.0 151 84.8
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 6.9e-63 245.0 153 83.0
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 9.0e-63 244.6 302 61.3
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.2e-62 244.2 279 66.7
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 1.2e-62 244.2 285 68.4
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 1.5e-62 243.8 291 67.4
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 2.0e-62 243.4 152 82.9
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 2.0e-62 243.4 269 66.2
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 4.5e-62 242.3 195 69.2
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 5.8e-62 241.9 141 87.2
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 7.6e-62 241.5 290 65.5
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 2.2e-61 240.0 215 71.2
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 2.2e-61 240.0 281 68.0
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 2.9e-61 239.6 202 69.3
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 4.9e-61 238.8 175 74.3
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 6.4e-61 238.4 284 65.5
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.1e-60 237.7 154 78.6
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.4e-60 236.5 285 60.4
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.2e-60 235.7 254 61.4
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.8e-58 230.3 283 70.3
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 1.8e-58 230.3 135 86.7
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 5.1e-58 228.8 238 63.0
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 5.1e-58 228.8 262 61.8
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 8.7e-58 228.0 282 63.5
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 8.7e-58 228.0 282 63.5
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 7.6e-54 214.9 235 59.1
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.1e-52 211.1 292 57.2
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 1.4e-52 210.7 290 62.4
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 1.9e-52 210.3 144 77.8
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 5.1e-50 202.2 191 64.4
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 5.7e-49 198.7 168 69.0
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 1.6e-48 197.2 257 61.9
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 2.2e-48 196.8 123 81.3
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 2.2e-48 196.8 195 60.0
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 4.8e-48 195.7 150 72.0
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 3.4e-46 189.5 160 62.5
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.3e-45 187.6 252 55.2
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 4.6e-43 179.1 152 61.8
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 8.8e-42 174.9 166 60.8
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 1.3e-40 171.0 220 54.1
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 2.2e-40 170.2 124 71.8
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 3.6e-35 152.9 94 80.9
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 5.7e-33 145.6 190 51.1
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 4.8e-32 142.5 205 51.2
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 4.8e-32 142.5 192 50.0
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 4.8e-32 142.5 192 50.0
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 1.1e-31 141.4 102 71.6
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.1e-31 139.8 177 50.3
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 1.9e-28 130.6 137 54.0
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 6.5e-21 105.5 196 45.4
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 4.5e-14 82.8 292 43.5
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 7.7e-14 82.0 62 72.6
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 7.7e-14 82.0 69 65.2
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 1.3e-13 81.3 159 45.9
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.7e-13 80.9 52 71.2


User provided reference genes

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