Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g038110.1 Solanum lycopersicum HOM05D003938 ORTHO05D004759 1.3e-30 135.6 62 100.0
Sopen02g012840 Solanum pennellii HOM05D003938 ORTHO05D004759 2.5e-21 104.8 60 81.7
Solyc02g061800.2 Solanum lycopersicum HOM05D003938 ORTHO05D004759 3.3e-21 104.4 60 81.7
Solyc12g049430.1 Solanum lycopersicum HOM05D003938 ORTHO05D004759 3.3e-21 104.4 60 80.0
Gohir.A05G003300 Gossypium hirsutum HOM05D003938 ORTHO05D004759 8.0e-20 99.8 60 76.7
Gohir.D05G003701 Gossypium hirsutum HOM05D003938 ORTHO05D004759 8.0e-20 99.8 60 76.7
Gorai.009G003300 Gossypium raimondii HOM05D003938 ORTHO05D004759 8.0e-20 99.8 60 76.7
Cc05_g16030 Coffea canephora HOM05D003938 ORTHO05D004759 1.0e-19 99.4 60 78.3
Migut.M01560 Erythranthe guttata HOM05D003938 ORTHO05D004759 1.0e-19 99.4 60 78.3
Peaxi162Scf00452g00848 Petunia axillaris HOM05D003938 ORTHO05D004759 3.1e-19 97.8 60 76.7
unitig_26.g10081 Utricularia gibba HOM05D003938 ORTHO05D004759 4.0e-19 97.4 60 75.0
Oeu003830.4 Olea europaea HOM05D003938 ORTHO05D004759 5.2e-19 97.1 60 75.0
Solyc07g066420.4 Solanum lycopersicum HOM05D003938 ORTHO05D004759 5.2e-19 97.1 60 73.3
Sopen07g034590 Solanum pennellii HOM05D003938 ORTHO05D004759 5.2e-19 97.1 60 73.3
CAN.G943.34 Capsicum annuum HOM05D003938 ORTHO05D004759 6.8e-19 96.7 60 75.0
SGA_v2.0_scaffold7G03579 Striga asiatica HOM05D003938 ORTHO05D004759 8.9e-19 96.3 60 73.3
THA.LOC104822756 Tarenaya hassleriana HOM05D003938 ORTHO05D004759 8.9e-19 96.3 60 73.3
Duzib168G1061 Durio zibethinus HOM05D003938 ORTHO05D004759 1.2e-18 95.9 60 73.3
ECA240G3729 Erigeron canadensis HOM05D003938 ORTHO05D004759 1.5e-18 95.5 60 71.7
Lsat_1_v5_gn_7_71321 Lactuca sativa HOM05D003938 ORTHO05D004759 1.5e-18 95.5 60 75.0
Aa31LG10G170 Aethionema arabicum HOM05D003938 ORTHO05D004759 2.6e-18 94.7 60 70.0
DCAR_013743 Daucus carota HOM05D003938 ORTHO05D004759 2.6e-18 94.7 60 75.0
arahy.Tifrunner.gnm1.ann1.KA488U Arachis hypogaea HOM05D003938 ORTHO05D004759 3.4e-18 94.4 60 73.3
arahy.Tifrunner.gnm1.ann1.TD7I6F Arachis hypogaea HOM05D003938 ORTHO05D004759 3.4e-18 94.4 60 73.3
Glyma.15G213200 Glycine max HOM05D003938 ORTHO05D004759 3.4e-18 94.4 60 71.7
Glyma.19G004200 Glycine max HOM05D003938 ORTHO05D004759 3.4e-18 94.4 60 71.7
Manes.06G173850 Manihot esculenta HOM05D003938 ORTHO05D004759 3.4e-18 94.4 60 71.7
VMungo1127G1769 Vigna mungo HOM05D003938 ORTHO05D004759 3.4e-18 94.4 60 71.7
HanXRQChr05g0160881 Helianthus annuus HOM05D003938 ORTHO05D004759 4.4e-18 94.0 60 73.3
Psat4g174080 Pisum sativum HOM05D003938 ORTHO05D004759 4.4e-18 94.0 60 68.3
Potri.005G097500 Populus trichocarpa HOM05D003938 ORTHO05D004759 4.4e-18 94.0 60 71.7
Sabra05G0079800 Salix brachista HOM05D003938 ORTHO05D004759 4.4e-18 94.0 60 71.7
TWI74G0164 Tripterygium wilfordii HOM05D003938 ORTHO05D004759 4.4e-18 94.0 60 71.7
Carub.0008s0543 Capsella rubella HOM05D003938 ORTHO05D004759 5.8e-18 93.6 60 68.3
CARHR044020 Cardamine hirsuta HOM05D003938 ORTHO05D004759 5.8e-18 93.6 60 70.0
AUR62037621 Chenopodium quinoa HOM05D003938 ORTHO05D004759 5.8e-18 93.6 60 70.0
RcHm_v2.0_Chr5g0026161 Rosa chinensis HOM05D003938 ORTHO05D004759 5.8e-18 93.6 60 73.3
Cpa.g.sc331.3 Carica papaya HOM05D003938 ORTHO05D004759 7.5e-18 93.2 60 73.3
Thhalv10011414m.g Eutrema salsugineum HOM05D003938 ORTHO05D004759 7.5e-18 93.2 60 70.0
FvH4_3g15530 Fragaria vesca HOM05D003938 ORTHO05D004759 7.5e-18 93.2 60 73.3
FAN11G2591 Fragaria x ananassa HOM05D003938 ORTHO05D004759 7.5e-18 93.2 60 73.3
FAN21G1947 Fragaria x ananassa HOM05D003938 ORTHO05D004759 7.5e-18 93.2 60 73.3
FAN25G2080 Fragaria x ananassa HOM05D003938 ORTHO05D004759 7.5e-18 93.2 60 73.3
MD05G1222400 Malus domestica HOM05D003938 ORTHO05D004759 9.8e-18 92.8 60 71.7
MD10G1204000 Malus domestica HOM05D003938 ORTHO05D004759 9.8e-18 92.8 60 71.7
Prupe.4G137900 Prunus persica HOM05D003938 ORTHO05D004759 9.8e-18 92.8 60 71.7
PGR119G1566 Punica granatum HOM05D003938 ORTHO05D004759 9.8e-18 92.8 60 70.0
AT1G53720 Arabidopsis thaliana HOM05D003938 ORTHO05D004759 1.3e-17 92.4 60 70.0
MSTRG.16112 Avicennia marina HOM05D003938 ORTHO05D004759 1.3e-17 92.4 60 73.3
EL10Ac2g03350 Beta vulgaris HOM05D003938 ORTHO05D004759 1.3e-17 92.4 60 68.3
BraA08t32068Z Brassica rapa HOM05D003938 ORTHO05D008065 1.3e-17 92.4 60 70.0
Carub.0001s4300 Capsella rubella HOM05D003938 ORTHO05D004759 1.3e-17 92.4 60 68.3
Nitab4.5_0001749g0120 Nicotiana tabacum HOM05D003938 ORTHO05D004759 1.3e-17 92.4 60 71.7
Sp1g38950 Schrenkiella parvula HOM05D003938 ORTHO05D004759 1.3e-17 92.4 60 70.0
AL1G62420 Arabidopsis lyrata HOM05D003938 ORTHO05D004759 1.7e-17 92.0 60 68.3
BcaB04g16924 Brassica carinata HOM05D003938 ORTHO05D004759 1.7e-17 92.0 60 70.0
C03p93390 Brassica napus HOM05D003938 ORTHO05D008065 1.7e-17 92.0 60 70.0
BolC3t21636H Brassica oleracea HOM05D003938 ORTHO05D008065 1.7e-17 92.0 60 70.0
Eucgr.F01467 Eucalyptus grandis HOM05D003938 ORTHO05D004759 1.7e-17 92.0 60 70.0
TPR.G9407 Trifolium pratense HOM05D003938 ORTHO05D004759 2.2e-17 91.7 60 68.3
GSVIVG01020281001 Vitis vinifera HOM05D003938 ORTHO05D004759 2.2e-17 91.7 60 71.7
CANSAT80G1380 Cannabis sativa HOM05D003938 ORTHO05D004759 2.9e-17 91.3 60 70.0
AUR62040863 Chenopodium quinoa HOM05D003938 ORTHO05D004759 2.9e-17 91.3 60 68.3
Ca_12645_v3 Cicer arietinum L. HOM05D003938 ORTHO05D004759 2.9e-17 91.3 59 69.5
Eucgr.F01469 Eucalyptus grandis HOM05D003938 ORTHO05D004759 2.9e-17 91.3 60 70.0
Phvul.011G177175 Phaseolus vulgaris HOM05D003938 ORTHO05D004759 2.9e-17 91.3 60 68.3
Ciclev10004604m.g Citrus clementina HOM05D003938 ORTHO05D004759 3.7e-17 90.9 60 71.7
Medtr6g084140 Medicago truncatula HOM05D003938 ORTHO05D004759 3.7e-17 90.9 60 68.3
CiPaw.01G119900 Carya illinoinensis HOM05D003938 ORTHO05D004759 4.9e-17 90.5 60 71.7
QL04p077101 Quercus lobata HOM05D003938 ORTHO05D004759 4.9e-17 90.5 60 71.7
QL04p077115 Quercus lobata HOM05D003938 ORTHO05D004759 4.9e-17 90.5 60 71.7
Thecc.09G180900 Theobroma cacao HOM05D003938 ORTHO05D004759 4.9e-17 90.5 60 68.3
TPR.G22448 Trifolium pratense HOM05D003938 ORTHO05D004759 4.9e-17 90.5 60 66.7
Medtr8g442420 Medicago truncatula HOM05D003938 ORTHO05D004759 8.3e-17 89.7 59 67.8
Lj3g0013935 Lotus japonicus HOM05D003938 ORTHO05D004759 1.1e-16 89.4 60 66.7
TAR626G0088 Trochodendron aralioides HOM05D003938 ORTHO05D004759 1.1e-16 89.4 60 71.7
CSS0000259 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 1.4e-16 89.0 60 71.7
CSS0007376 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 1.4e-16 89.0 60 71.7
CSS0019207 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 1.4e-16 89.0 60 71.7
Aqoxy3G04185_Aqoxy3G04186 Aquilegia oxysepala HOM05D003938 ORTHO05D004759 1.9e-16 88.6 60 70.0
ClCG09G022610 Citrullus lanatus HOM05D003938 ORTHO05D004759 1.9e-16 88.6 60 68.3
MELO3C012622.2 Cucumis melo HOM05D003938 ORTHO05D004759 1.9e-16 88.6 60 68.3
Atru.chr1.189 Acer truncatum HOM05D003938 ORTHO05D004759 3.2e-16 87.8 60 68.3
AagrBONN_evm.TU.Sc2ySwM_368.1871 Anthoceros agrestis HOM05D003938 ORTHO05D004759 3.2e-16 87.8 60 65.0
CsaV3_7G022770 Cucumis sativus L. HOM05D003938 ORTHO05D004759 3.2e-16 87.8 60 68.3
Pp3c1_5600 Physcomitrium patens HOM05D003938 ORTHO05D004759 3.2e-16 87.8 60 66.7
Actinidia07348 Actinidia chinensis HOM05D003938 ORTHO05D004759 4.1e-16 87.4 60 68.3
HPP92_008853 Vanilla planifolia HOM05D003938 ORTHO05D004759 4.1e-16 87.4 60 70.0
HPP92_008859 Vanilla planifolia HOM05D003938 ORTHO05D004759 4.1e-16 87.4 60 70.0
Lj8A187T28 Lonicera japonica HOM05D003938 ORTHO05D004759 5.4e-16 87.0 60 70.0
Lalb_Chr01g0007211 Lupinus albus HOM05D003938 ORTHO05D004759 5.4e-16 87.0 60 68.3
FvH4_3g21900 Fragaria vesca HOM05D003938 ORTHO05D004759 7.0e-16 86.7 60 70.0
PSO675G9176 Papaver somniferum HOM05D003938 ORTHO05D004759 7.0e-16 86.7 60 66.7
CBR_g2920 Chara braunii HOM05D003938 ORTHO05D004759 9.2e-16 86.3 60 60.0
Sed0018665 Sechium edule HOM05D003938 ORTHO05D004759 9.2e-16 86.3 60 68.3
CDE01G0219 Ceratophyllum demersum HOM05D003938 ORTHO05D004759 1.2e-15 85.9 60 66.7
Nn7g37935 Nelumbo nucifera HOM05D003938 ORTHO05D004759 1.2e-15 85.9 60 68.3
CSS0016392 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 1.6e-15 85.5 60 68.3
CSS0024659 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 1.6e-15 85.5 60 68.3
PSO717G0129 Papaver somniferum HOM05D003938 ORTHO05D004759 1.6e-15 85.5 60 65.0
Solyc12g038030.1 Solanum lycopersicum HOM05D003938 ORTHO05D004759 2.0e-15 85.1 50 84.0
SMO351G0536 Selaginella moellendorffii HOM05D003938 ORTHO05D004759 2.7e-15 84.7 60 61.7
MBI01_g43614_MAGBIO Magnolia biondii HOM05D003938 ORTHO05D004759 3.5e-15 84.3 60 66.7
Mapoly0010s0175 Marchantia polymorpha HOM05D003938 ORTHO05D004759 7.8e-15 83.2 60 63.3
Os06g0670500 Oryza sativa ssp. japonica HOM05D003938 ORTHO05D004759 3.0e-14 81.3 60 66.7
Zm00001eb274050 Zea mays HOM05D003938 ORTHO05D004759 5.0e-14 80.5 60 66.7
Haze_10874 Corylus avellana HOM05D003938 ORTHO05D004759 1.1e-13 79.3 50 70.0
EL10Ac6g14412 Beta vulgaris HOM05D003938 ORTHO05D004759 1.5e-13 79.0 60 61.7
BolC6t36702H Brassica oleracea HOM05D000070 ORTHO05D003301 2.5e-13 78.2 60 60.0
MCO01G120 Micromonas commoda HOM05D003938 ORTHO05D004759 2.5e-13 78.2 60 58.3
Os06g0670400 Oryza sativa ssp. japonica HOM05D003938 ORTHO05D004759 3.3e-13 77.8 60 63.3
Cre11.g479850 Chlamydomonas reinhardtii HOM05D003938 ORTHO05D004759 5.6e-13 77.0 60 55.0
Ciclev10007155m.g Citrus clementina HOM05D003938 ORTHO05D004759 6.2e-12 73.6 60 56.7
AL1G53090 Arabidopsis lyrata HOM05D000070 ORTHO05D004759 2.3e-11 71.6 60 56.7
Haze_07842 Corylus avellana HOM05D003938 ORTHO05D004759 8.9e-11 69.7 93 43.0
A08p00110 Brassica napus HOM05D000173 ORTHO05D008065 1.7e-09 65.5 43 69.8
Haze_26935 Corylus avellana HOM05D003938 ORTHO05D004759 4.9e-09 63.9 60 48.3
AUR62027709 Chenopodium quinoa HOM05D003938 ORTHO05D004759 3.2e-08 61.2 47 59.6
AUR62041826 Chenopodium quinoa HOM05D003938 ORTHO05D004759 3.2e-08 61.2 47 59.6
MCO09G594 Micromonas commoda HOM05D000144 ORTHO05D007858 2.7e-07 58.2 58 46.6
CARHR248660 Cardamine hirsuta HOM05D003938 ORTHO05D004759 3.5e-07 57.8 59 49.2
Cfa027052 Carpinus fangiana HOM05D000144 ORTHO05D125675 4.6e-07 57.4 59 45.8
Pp3c22_5330 Physcomitrium patens HOM05D000144 ORTHO05D006641 6.0e-07 57.0 58 46.6
SMO353G0235 Selaginella moellendorffii HOM05D003938 ORTHO05D004759 7.8e-07 56.6 60 45.0
MSTRG.19277 Avicennia marina HOM05D000144 ORTHO05D006641 1.7e-06 55.5 58 43.1
AagrBONN_evm.TU.Sc2ySwM_344.2630 Anthoceros agrestis HOM05D003938 ORTHO05D004759 3.0e-06 54.7 39 61.5
SalBow3G4068 Salvia bowleyana HOM05D000144 ORTHO05D006641 3.9e-06 54.3 58 41.4
CSS0015780 Camellia sinensis var. sinensis HOM05D000144 ORTHO05D006641 5.1e-06 53.9 58 41.4
Migut.J01001 Erythranthe guttata HOM05D000144 ORTHO05D006641 5.1e-06 53.9 58 41.4
Mapoly0028s0032 Marchantia polymorpha HOM05D000144 ORTHO05D006641 6.6e-06 53.5 58 43.1
ECA238G0760 Erigeron canadensis HOM05D000144 ORTHO05D006641 8.6e-06 53.1 58 41.4


User provided reference genes

Program Settings