Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g036010.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.7e-24 115.2 57 100.0
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 6.7e-21 103.2 55 89.1
PGSC0003DMG400020296 Solanum tuberosum HOM05D000216 ORTHO05D000634 6.7e-21 103.2 55 89.1
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 7.4e-20 99.8 55 85.5
Sopen08g009650 Solanum pennellii HOM05D000216 ORTHO05D000634 7.4e-20 99.8 54 88.9
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 4.1e-18 94.0 55 80.0
HanXRQChr00c0300g0573171 Helianthus annuus HOM05D000216 ORTHO05D000634 5.3e-18 93.6 55 76.4
HanXRQChr00c0988g0578121 Helianthus annuus HOM05D000216 ORTHO05D000634 5.3e-18 93.6 55 76.4
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 5.3e-18 93.6 55 76.4
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 5.3e-18 93.6 55 76.4
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 5.3e-18 93.6 55 76.4
Solyc03g095380.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 5.3e-18 93.6 55 80.0
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 6.9e-18 93.2 55 80.0
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 9.0e-18 92.8 55 78.2
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 1.5e-17 92.0 55 78.2
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 1.5e-17 92.0 55 78.2
CAN.G1738.9 Capsicum annuum HOM05D000216 ORTHO05D000634 1.5e-17 92.0 55 81.8
Hma1.2p1_0094F.1_g047104 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 1.5e-17 92.0 55 78.2
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 2.0e-17 91.7 55 76.4
Lsat_1_v5_gn_9_5941 Lactuca sativa HOM05D000216 ORTHO05D000634 2.0e-17 91.7 55 74.5
Nn3g18112 Nelumbo nucifera HOM05D000216 ORTHO05D000634 2.6e-17 91.3 55 76.4
ECA054G0005 Erigeron canadensis HOM05D000216 ORTHO05D000634 3.4e-17 90.9 55 74.5
ECA169G0008 Erigeron canadensis HOM05D000216 ORTHO05D000634 3.4e-17 90.9 55 74.5
Nitab4.5_0002868g0030 Nicotiana tabacum HOM05D000216 ORTHO05D000634 3.4e-17 90.9 55 76.4
Nitab4.5_0005637g0010 Nicotiana tabacum HOM05D000216 ORTHO05D000634 4.5e-17 90.5 55 78.2
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 4.5e-17 90.5 55 76.4
Hund18043 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.5e-17 90.5 55 74.5
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.5e-17 90.5 55 74.5
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.5e-17 90.5 55 74.5
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.5e-17 90.5 55 74.5
Hund27996 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.5e-17 90.5 55 74.5
Hund28153 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.5e-17 90.5 55 74.5
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.5e-17 90.5 55 74.5
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.5e-17 90.5 55 74.5
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.5e-17 90.5 55 74.5
Hund28617 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.5e-17 90.5 55 74.5
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.5e-17 90.5 55 74.5
Hund29352 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.5e-17 90.5 55 74.5
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.5e-17 90.5 55 74.5
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 5.9e-17 90.1 55 74.5
CAN.G43.2 Capsicum annuum HOM05D000216 ORTHO05D000634 1.3e-16 89.0 56 75.0
Migut.L00290 Erythranthe guttata HOM05D000216 ORTHO05D000634 1.7e-16 88.6 55 74.5
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 1.7e-16 88.6 55 76.4
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 1.7e-16 88.6 55 76.4
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 1.7e-16 88.6 55 74.5
CAN.G844.3 Capsicum annuum HOM05D000216 ORTHO05D000634 2.2e-16 88.2 56 75.0
GSVIVG01017094001 Vitis vinifera HOM05D000216 ORTHO05D000634 2.2e-16 88.2 55 74.5
Lj2A1237T129 Lonicera japonica HOM05D000216 ORTHO05D000634 3.8e-16 87.4 55 74.5
Lj2C1238G20 Lonicera japonica HOM05D000216 ORTHO05D000634 3.8e-16 87.4 55 74.5
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 3.8e-16 87.4 55 74.5
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 3.8e-16 87.4 55 74.5
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 3.8e-16 87.4 55 74.5
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 3.8e-16 87.4 55 74.5
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 3.8e-16 87.4 55 74.5
GSVIVG01019173001 Vitis vinifera HOM05D000216 ORTHO05D000634 3.8e-16 87.4 55 74.5
AUR62024082 Chenopodium quinoa HOM05D000216 ORTHO05D000634 5.0e-16 87.0 55 72.7
SHI35296 Sapria himalayana HOM05D000216 ORTHO05D000634 6.5e-16 86.7 55 74.5
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 1.1e-15 85.9 55 74.5
Oeu062867.1 Olea europaea HOM05D000216 ORTHO05D000634 1.1e-15 85.9 55 70.9
SGA_v2.0_scaffold477G52216 Striga asiatica HOM05D000216 ORTHO05D000634 1.1e-15 85.9 55 72.7
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 1.4e-15 85.5 55 72.7
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 1.9e-15 85.1 57 71.9
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 1.9e-15 85.1 57 71.9
BolSC29t60451H Brassica oleracea HOM05D000216 ORTHO05D000634 1.9e-15 85.1 57 71.9
BolSC44t60847H Brassica oleracea HOM05D000216 ORTHO05D000634 1.9e-15 85.1 57 71.9
BolSC45t60937H Brassica oleracea HOM05D000216 ORTHO05D000634 1.9e-15 85.1 57 71.9
BraSC140t45588Z Brassica rapa HOM05D000216 ORTHO05D000634 1.9e-15 85.1 57 71.9
BraSC151t45695Z Brassica rapa HOM05D000216 ORTHO05D000634 1.9e-15 85.1 57 71.9
CARHR281920 Cardamine hirsuta HOM05D000216 ORTHO05D000634 1.9e-15 85.1 57 71.9
COL.COLO4_00652 Corchorus olitorius HOM05D000216 ORTHO05D000634 1.9e-15 85.1 55 72.7
Potri.019G028101 Populus trichocarpa HOM05D000216 ORTHO05D000634 2.5e-15 84.7 53 75.5
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 3.2e-15 84.3 55 70.9
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 7.2e-15 83.2 55 72.7
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 7.2e-15 83.2 55 70.9
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 9.3e-15 82.8 55 69.1
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 1.2e-14 82.4 56 67.9
arahy.Tifrunner.gnm1.ann1.TW2HF4 Arachis hypogaea HOM05D000216 ORTHO05D000634 1.2e-14 82.4 56 67.9
Nitab4.5_0000172g0280 Nicotiana tabacum HOM05D000216 ORTHO05D000634 1.2e-14 82.4 55 69.1
SGA_v2.0_scaffold119G32687 Striga asiatica HOM05D000216 ORTHO05D000634 1.2e-14 82.4 55 69.1
ATR0624G050 Amborella trichopoda HOM05D000216 ORTHO05D000634 2.7e-14 81.3 57 68.4
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.6e-14 80.5 50 80.0
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.6e-14 80.5 50 80.0
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.6e-14 80.5 50 80.0
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.6e-14 80.5 50 80.0
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 1.4e-13 79.0 55 61.8
Lalb_Chr09g0335371 Lupinus albus HOM05D000216 ORTHO05D000634 2.3e-13 78.2 55 65.5
Oeu050097.1 Olea europaea HOM05D000216 ORTHO05D000634 5.1e-13 77.0 55 65.5
Psat4g147920 Pisum sativum HOM05D000216 ORTHO05D000634 8.8e-13 76.3 55 63.6
Lsat_1_v5_gn_7_70621 Lactuca sativa HOM05D000216 ORTHO05D000634 1.1e-12 75.9 49 71.4
Eucgr.J01352 Eucalyptus grandis HOM05D000216 ORTHO05D000634 1.9e-12 75.1 55 60.0
Migut.D01341 Erythranthe guttata HOM05D000216 ORTHO05D000634 2.5e-12 74.7 55 69.1
EL10As27g24246 Beta vulgaris HOM05D000216 ORTHO05D007161 1.3e-11 72.4 55 65.5
ClCG01G011260 Citrullus lanatus HOM05D000216 ORTHO05D000634 1.7e-11 72.0 48 70.8
Solyc01g017420.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.7e-11 72.0 53 73.6
Nitab4.5_0001761g0170 Nicotiana tabacum HOM05D000216 ORTHO05D000634 2.8e-11 71.2 37 91.9
MELO3C001093.2 Cucumis melo HOM05D000216 ORTHO05D000634 6.9e-10 66.6 37 83.8
Eucgr.K01622 Eucalyptus grandis HOM05D000216 ORTHO05D000634 2.6e-09 64.7 38 76.3
Sc10g0006900 Simmondsia chinensis HOM05D000216 ORTHO05D000634 7.7e-09 63.2 53 54.7
arahy.Tifrunner.gnm1.ann1.KRC0HM Arachis hypogaea HOM05D000216 ORTHO05D000634 1.0e-08 62.8 37 78.4
Solyc01g017510.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.3e-08 62.4 37 83.8
Gohir.D07G215200 Gossypium hirsutum HOM05D000216 ORTHO05D000634 8.5e-08 59.7 54 57.4
SEGI_37297 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 1.9e-07 58.5 58 46.6
Ah.03g148650 Amaranthus hybridus HOM05D000216 ORTHO05D000634 2.5e-07 58.2 37 73.0
BolC7t41735H Brassica oleracea HOM05D000216 ORTHO05D000634 9.4e-07 56.2 39 71.8
ClCG00G001580 Citrullus lanatus HOM05D000216 ORTHO05D000634 2.7e-06 54.7 35 74.3
Lalb_Chr13g0292881 Lupinus albus HOM05D000216 ORTHO05D000634 4.7e-06 53.9 34 73.5
Medtr8g016520 Medicago truncatula HOM05D000216 ORTHO05D000634 7.9e-06 53.1 36 66.7


User provided reference genes

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