Gene: Solyc00g500052.1
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc00g500052.1
- Transcript Identifier Solyc00g500052.1.1
- Gene Type Coding gene
- Location SL4.0ch00 : 1475301-1482402 : negative
Gene Family Information
- ID HOM05D000216
- #Genes/#Species 1874/88
- Phylogenetic origin
- ID ORTHO05D000634
- #Genes/#Species 723/78
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Solyc00g500052.1.1
- gene_id Solyc00g500052
Descriptions
- Description DNA-directed RNA polymerase subunit beta'' (AHRD V3.3 *-* A0A1U8QCC7_CAPAN)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006351 | IEA | InterPro | transcription, DNA-templated | |
| GO:0006354 | ISO | PLAZA Integrative Orthology | DNA-templated transcription, elongation | ATCG00180 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | ATCG00180 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | ATCG00180 |
| GO:0042644 | ISO | PLAZA Integrative Orthology | chloroplast nucleoid | ATCG00180 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR007081 | RNA polymerase Rpb1, domain 5 |
| IPR006592 | RNA polymerase, N-terminal |
| IPR042102 | RNA polymerase Rpb1, domain 3 superfamily |
| IPR000722 | RNA polymerase, alpha subunit |
| IPR007080 | RNA polymerase Rpb1, domain 1 |
| IPR038120 | RNA polymerase Rpb1, funnel domain superfamily |
| IPR007083 | RNA polymerase Rpb1, domain 4 |
| Mapman id | Description |
|---|---|
| 15.6.1.2.1.3 | RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.core components.core component RpoC1 |
| 15.6.1.2.1.4 | RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.core components.core component RpoC2 |