Gene: Lj2C1238G20

General Information

Structural Information

Species Lonicera japonica
Gene Identifier Lj2C1238G20
Transcript Identifier Lj2C1238G20.1
Gene Type Coding gene
Location GWHAAZE00000002 : 123807135-123812911 : positive

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D000216
#Genes/#Species 1874/88
Phylogenetic origin

ID ORTHO05D000634
#Genes/#Species 723/78
Phylogenetic origin

Gene Duplication Information

Tandem Duplication Tandem duplicate
Block Duplication Block duplicate

Labels

Identifiers

tid Lj2C1238G20.1
Accession GWHGAAZE010150
Accession GWHTAAZE010162

Descriptions

Ortholog descriptions

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006351	IEA	InterPro	transcription, DNA-templated
GO:0006354	ISO	PLAZA Integrative Orthology	DNA-templated transcription, elongation	ATCG00180

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003677	IEA	InterPro	DNA binding
GO:0003899	IEA	InterPro	DNA-directed 5'-3' RNA polymerase activity
GO:0003729	ISO	PLAZA Integrative Orthology	mRNA binding	ATCG00180

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009570	ISO	PLAZA Integrative Orthology	chloroplast stroma	ATCG00170
GO:0009507	ISO	PLAZA Integrative Orthology	chloroplast	ATCG00180
GO:0042644	ISO	PLAZA Integrative Orthology	chloroplast nucleoid	ATCG00180

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR006592	RNA polymerase, N-terminal
IPR007080	RNA polymerase Rpb1, domain 1
IPR007081	RNA polymerase Rpb1, domain 5
IPR042102	RNA polymerase Rpb1, domain 3 superfamily
IPR000722	RNA polymerase, alpha subunit
IPR007066	RNA polymerase Rpb1, domain 3

Mapman id	Description
15.6.1.2.1.3	RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.core components.core component RpoC1
15.6.1.2.1.4	RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.core components.core component RpoC2