Gene: Sopen08g009650
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen08g009650
- Transcript Identifier Sopen08g009650.1
- Gene Type Coding gene
- Location Spenn-ch08 : 22058375-22062812 : negative
Gene Family Information
- ID HOM05D000216
- #Genes/#Species 1874/88
- Phylogenetic origin
- ID ORTHO05D000634
- #Genes/#Species 723/78
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen08g009650.1
Descriptions
- Description DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) - Solanum tuberosum (Potato), RNA polymerase beta subunit-2 | RPOC2 | FUNCTIONS IN: DNA-directed RNA polymerase activity | INVOLVED IN: RNA elongation | LOCATED IN: chloroplast, nucleoid | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA polymerase Rpb1, domain 3 , RNA polymerase Rpb1, domain 5 , DNA-directed RNA polymerase, subunit beta, apos,, apos | , RNA polymerase Rpb1, domain 4 | BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase A1 .
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006351 | IEA | InterPro | transcription, DNA-templated | |
| GO:0006354 | ISO | PLAZA Integrative Orthology | DNA-templated transcription, elongation | ATCG00170 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | ATCG00170 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | ATCG00170 |
| GO:0042644 | ISO | PLAZA Integrative Orthology | chloroplast nucleoid | ATCG00170 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |