Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g049590.1 Solanum lycopersicum HOM05D000216 ORTHO05D007069 1.3e-49 199.5 104 100.0
arahy.Tifrunner.gnm1.ann1.J2QZCX Arachis hypogaea HOM05D000216 ORTHO05D001131 1.8e-08 62.8 73 46.6
Migut.D01417 Erythranthe guttata HOM05D000216 ORTHO05D001131 1.8e-08 62.8 68 54.4
Nitab4.5_0000172g0580 Nicotiana tabacum HOM05D006320 ORTHO05D007069 3.1e-08 62.0 41 87.8
Nitab4.5_0002326g0030 Nicotiana tabacum HOM05D006320 ORTHO05D007069 4.1e-08 61.6 41 85.4
RhsimMtG0004200 Rhododendron simsii HOM05D006320 ORTHO05D007069 5.3e-08 61.2 41 85.4
arahy.Tifrunner.gnm1.ann1.MIWC4Y Arachis hypogaea HOM05D000216 ORTHO05D001131 9.1e-08 60.5 42 73.8
Nitab4.5_0000859g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 9.1e-08 60.5 53 66.0
Ah.01g011550 Amaranthus hybridus HOM05D000216 ORTHO05D001131 1.2e-07 60.1 31 96.8
Ah.09g227320 Amaranthus hybridus HOM05D000216 ORTHO05D001131 1.2e-07 60.1 31 96.8
Ah.10g027590 Amaranthus hybridus HOM05D000216 ORTHO05D001131 1.2e-07 60.1 31 96.8
Ah.10g027890 Amaranthus hybridus HOM05D000216 ORTHO05D001131 1.2e-07 60.1 31 96.8
Ah.10g028290 Amaranthus hybridus HOM05D000216 ORTHO05D001131 1.2e-07 60.1 31 96.8
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 1.2e-07 60.1 31 96.8
EL10As4g23395 Beta vulgaris HOM05D000216 ORTHO05D001131 1.2e-07 60.1 31 96.8
CAN.G1648.7 Capsicum annuum HOM05D000216 ORTHO05D001131 1.2e-07 60.1 31 96.8
CAN.G1738.7 Capsicum annuum HOM05D000216 ORTHO05D001131 1.2e-07 60.1 31 96.8
CAN.G566.29 Capsicum annuum HOM05D000216 ORTHO05D001131 1.2e-07 60.1 31 96.8
CAN.G892.2 Capsicum annuum HOM05D000216 ORTHO05D001131 1.2e-07 60.1 31 96.8
CDE02G4101 Ceratophyllum demersum HOM05D006320 ORTHO05D007069 1.2e-07 60.1 41 82.9
Dinv06672 Davidia involucrata HOM05D001750 ORTHO05D001825 1.2e-07 60.1 41 82.9
Dinv06715 Davidia involucrata HOM05D006320 ORTHO05D007069 1.2e-07 60.1 41 82.9
Dinv18904 Davidia involucrata HOM05D001750 ORTHO05D001825 1.2e-07 60.1 41 82.9
Gorai.008G086500 Gossypium raimondii HOM05D000216 ORTHO05D001131 1.2e-07 60.1 31 96.8
Hma1.2p1_0094F.1_g047108 Hydrangea macrophylla HOM05D000216 ORTHO05D001131 1.2e-07 60.1 31 96.8
Hma1.2p1_1191F.1_g265490 Hydrangea macrophylla HOM05D006320 ORTHO05D007069 1.2e-07 60.1 41 82.9
LjContig00489g0016354 Lotus japonicus HOM05D000216 ORTHO05D001131 1.2e-07 60.1 31 96.8
PSO548G0026 Papaver somniferum HOM05D000216 ORTHO05D001131 1.2e-07 60.1 31 96.8
Peaxi162Scf00921g00231 Petunia axillaris HOM05D000216 ORTHO05D001131 1.2e-07 60.1 31 96.8
Hund27557 Selenicereus undatus HOM05D001750 ORTHO05D007069 1.2e-07 60.1 41 82.9
Sc13g0006970 Simmondsia chinensis HOM05D000216 ORTHO05D001131 1.2e-07 60.1 31 96.8
Sc15g0001760 Simmondsia chinensis HOM05D000216 ORTHO05D001131 1.2e-07 60.1 31 96.8
Sc25g0001960 Simmondsia chinensis HOM05D000216 ORTHO05D001131 1.2e-07 60.1 31 96.8
Ca_05611_v3 Cicer arietinum L. HOM05D000216 ORTHO05D001131 1.5e-07 59.7 42 71.4
Medtr4g051130 Medicago truncatula HOM05D000216 ORTHO05D001131 1.5e-07 59.7 42 71.4
Potri.013G142232 Populus trichocarpa HOM05D000216 ORTHO05D001131 1.5e-07 59.7 31 93.5
SabraPtG0001100 Salix brachista HOM05D000216 ORTHO05D001131 1.5e-07 59.7 31 93.5
ATR0427G001 Amborella trichopoda HOM05D000216 ORTHO05D001131 2.0e-07 59.3 42 73.8
CAN.G1576.2 Capsicum annuum HOM05D000216 ORTHO05D001131 2.0e-07 59.3 33 87.9
LjContig00318g0016482 Lotus japonicus HOM05D000216 ORTHO05D001131 2.0e-07 59.3 42 73.8
CsaV3_UNG208330 Cucumis sativus L. HOM05D000216 ORTHO05D001131 2.6e-07 58.9 31 93.5
RcHm_v2.0_CPg0502401 Rosa chinensis HOM05D000216 ORTHO05D001131 2.6e-07 58.9 31 93.5
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 2.6e-07 58.9 31 93.5
SalBow7G2811 Salvia bowleyana HOM05D000216 ORTHO05D001131 2.6e-07 58.9 31 93.5
Sed0002232 Sechium edule HOM05D000216 ORTHO05D001131 2.6e-07 58.9 31 93.5
Sed0007596 Sechium edule HOM05D000216 ORTHO05D001131 2.6e-07 58.9 31 93.5
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 2.6e-07 58.9 31 93.5
unitig_91.g26498 Utricularia gibba HOM05D000216 ORTHO05D001131 2.6e-07 58.9 31 93.5
VMungo1015G0001 Vigna mungo HOM05D000216 ORTHO05D001131 2.6e-07 58.9 31 93.5
Ah.10g028420 Amaranthus hybridus HOM05D006320 ORTHO05D007069 3.4e-07 58.5 41 80.5
Nn020s41502 Nelumbo nucifera HOM05D000216 ORTHO05D001131 3.4e-07 58.5 31 93.5
Nn082s42674 Nelumbo nucifera HOM05D000216 ORTHO05D001131 3.4e-07 58.5 31 93.5
Sed0021840 Sechium edule HOM05D006320 ORTHO05D007069 3.4e-07 58.5 41 80.5
Sopen12g013690 Solanum pennellii HOM05D006320 ORTHO05D007069 3.4e-07 58.5 37 91.9
CDE02G0866 Ceratophyllum demersum HOM05D000216 ORTHO05D001131 4.5e-07 58.2 31 90.3
ECA041G0001 Erigeron canadensis HOM05D001750 ORTHO05D001825 4.5e-07 58.2 41 82.9
ECA234G4202 Erigeron canadensis HOM05D006320 ORTHO05D007069 4.5e-07 58.2 41 82.9
Gohir.D02G042933 Gossypium hirsutum HOM05D000216 ORTHO05D001131 4.5e-07 58.2 31 93.5
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 4.5e-07 58.2 41 82.9
Lsat_1_v5_gn_8_111781 Lactuca sativa HOM05D006320 ORTHO05D007069 4.5e-07 58.2 41 82.9
Aqoxy12s033 Aquilegia oxysepala HOM05D006320 ORTHO05D007069 5.9e-07 57.8 41 80.5
arahy.Tifrunner.gnm1.ann1.5U23EP Arachis hypogaea HOM05D006320 ORTHO05D007069 5.9e-07 57.8 41 80.5
arahy.Tifrunner.gnm1.ann1.XSHW5Z Arachis hypogaea HOM05D006320 ORTHO05D007069 5.9e-07 57.8 41 80.5
arahy.Tifrunner.gnm1.ann1.YTYD5C Arachis hypogaea HOM05D006320 ORTHO05D007069 5.9e-07 57.8 41 80.5
CsaV3_UNG209120 Cucumis sativus L. HOM05D006320 ORTHO05D007069 5.9e-07 57.8 41 80.5
Gohir.D07G024400 Gossypium hirsutum HOM05D006320 ORTHO05D007069 5.9e-07 57.8 41 80.5
Gorai.001G163400 Gossypium raimondii HOM05D001750 ORTHO05D001825 5.9e-07 57.8 41 80.5
Lalb_Chr00c24g0406831 Lupinus albus HOM05D006320 ORTHO05D007069 5.9e-07 57.8 41 80.5
Lalb_Chr11g0070071 Lupinus albus HOM05D006320 ORTHO05D007069 5.9e-07 57.8 41 80.5
Phvul.005G088454 Phaseolus vulgaris HOM05D006320 ORTHO05D007069 5.9e-07 57.8 41 80.5
PGR028G0009 Punica granatum HOM05D006320 ORTHO05D007069 5.9e-07 57.8 41 80.5
Gorai.001G136600 Gossypium raimondii HOM05D000216 ORTHO05D001131 7.7e-07 57.4 31 93.5
Lj2A1238G119 Lonicera japonica HOM05D000216 ORTHO05D001131 7.7e-07 57.4 65 52.3
Lj2A1239T199 Lonicera japonica HOM05D000216 ORTHO05D001131 7.7e-07 57.4 65 52.3
Lj2C1237G9 Lonicera japonica HOM05D000216 ORTHO05D001131 7.7e-07 57.4 65 52.3
Psat0s6357g0040 Pisum sativum HOM05D000216 ORTHO05D001131 7.7e-07 57.4 31 87.1
Psat3g186440 Pisum sativum HOM05D000216 ORTHO05D001131 7.7e-07 57.4 31 87.1
PGR111G0080 Punica granatum HOM05D000216 ORTHO05D001131 7.7e-07 57.4 31 90.3
ATMG00040 Arabidopsis thaliana HOM05D010793 ORTHO05D011945 1.0e-06 57.0 46 71.7
CARHR282610 Cardamine hirsuta HOM05D010793 ORTHO05D011945 1.0e-06 57.0 46 71.7
Lalb_Chr09g0335411 Lupinus albus HOM05D000216 ORTHO05D001131 1.0e-06 57.0 47 63.8
Lalb_Chr10g0093911 Lupinus albus HOM05D006320 ORTHO05D007069 1.0e-06 57.0 37 83.8
AL5G20340 Arabidopsis lyrata HOM05D006320 ORTHO05D007069 1.3e-06 56.6 41 80.5
AT2G07671 Arabidopsis thaliana HOM05D006320 ORTHO05D007069 1.3e-06 56.6 41 80.5
ATMG01080 Arabidopsis thaliana HOM05D006320 ORTHO05D007069 1.3e-06 56.6 41 80.5
BolSC28t60384H Brassica oleracea HOM05D006320 ORTHO05D007069 1.3e-06 56.6 41 80.5
BolSC28t60392H Brassica oleracea HOM05D006320 ORTHO05D007069 1.3e-06 56.6 41 80.5
BolSC28t60418H Brassica oleracea HOM05D006320 ORTHO05D007069 1.3e-06 56.6 41 80.5
BraSC224t45817Z Brassica rapa HOM05D006320 ORTHO05D007069 1.3e-06 56.6 41 80.5
CAN.G1082.2 Capsicum annuum HOM05D000216 ORTHO05D001131 1.3e-06 56.6 31 90.3
CAN.G939.17 Capsicum annuum HOM05D000216 ORTHO05D001131 1.3e-06 56.6 30 93.3
DCAR_032476 Daucus carota HOM05D000216 ORTHO05D001131 1.3e-06 56.6 31 87.1
Thhalv10023008m.g Eutrema salsugineum HOM05D006320 ORTHO05D007069 1.3e-06 56.6 41 80.5
HanXRQChr11g0340041 Helianthus annuus HOM05D000216 ORTHO05D001131 1.3e-06 56.6 37 73.0
RcHm_v2.0_MTg0498361 Rosa chinensis HOM05D006320 ORTHO05D007069 1.3e-06 56.6 41 80.5
CARHR287930 Cardamine hirsuta HOM05D006320 ORTHO05D007069 1.7e-06 56.2 41 78.0
Cfa022996 Carpinus fangiana HOM05D001750 ORTHO05D001825 1.7e-06 56.2 41 78.0
Nitab4.5_0002418g0080 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.7e-06 56.2 41 78.0
SalBow1G1899 Salvia bowleyana HOM05D006320 ORTHO05D007069 1.7e-06 56.2 41 78.0
SGA_v2.0_scaffold255G45504 Striga asiatica HOM05D006320 ORTHO05D007069 1.7e-06 56.2 41 78.0
CANSAT16G0023 Cannabis sativa HOM05D006320 ORTHO05D007069 2.2e-06 55.8 41 80.5
AUR62042330 Chenopodium quinoa HOM05D006320 ORTHO05D007069 2.2e-06 55.8 41 80.5
Gohir.A07G155805 Gossypium hirsutum HOM05D000216 ORTHO05D001131 2.2e-06 55.8 32 90.6
SHI40315 Sapria himalayana HOM05D006320 ORTHO05D007069 2.2e-06 55.8 42 76.2
Gohir.D01G029500 Gossypium hirsutum HOM05D000216 ORTHO05D001131 2.9e-06 55.5 31 90.3
QL11p015550 Quercus lobata HOM05D000216 ORTHO05D001131 2.9e-06 55.5 31 83.9
AL2G20930 Arabidopsis lyrata HOM05D000216 ORTHO05D001131 3.8e-06 55.1 31 87.1
ATCG00190 Arabidopsis thaliana HOM05D000216 ORTHO05D001131 3.8e-06 55.1 31 87.1
BcaC02g10983 Brassica carinata HOM05D000216 ORTHO05D001131 3.8e-06 55.1 31 87.1
BcaC05g28800 Brassica carinata HOM05D000216 ORTHO05D001131 3.8e-06 55.1 31 87.1
BcaC09g49582 Brassica carinata HOM05D000216 ORTHO05D001131 3.8e-06 55.1 31 87.1
BNapus_Darmor_BZH_scaffold_253p00080 Brassica napus HOM05D000216 ORTHO05D001131 3.8e-06 55.1 31 87.1
C01p34910 Brassica napus HOM05D006320 ORTHO05D007069 3.8e-06 55.1 41 78.0
C01p34920 Brassica napus HOM05D000216 ORTHO05D001131 3.8e-06 55.1 31 87.1
C04p22660 Brassica napus HOM05D000216 ORTHO05D001131 3.8e-06 55.1 31 87.1
C04p27420 Brassica napus HOM05D006320 ORTHO05D007069 3.8e-06 55.1 37 86.5
BolC1t03457H Brassica oleracea HOM05D006320 ORTHO05D007069 3.8e-06 55.1 41 78.0
BolSC45t60940H Brassica oleracea HOM05D000216 ORTHO05D001131 3.8e-06 55.1 31 87.1
BolSC49t61196H Brassica oleracea HOM05D000216 ORTHO05D001131 3.8e-06 55.1 31 87.1
BraSC140t45585Z Brassica rapa HOM05D000216 ORTHO05D001131 3.8e-06 55.1 31 87.1
BraSC140t45600Z Brassica rapa HOM05D000216 ORTHO05D001131 3.8e-06 55.1 31 87.1
BraSC140t45606Z Brassica rapa HOM05D000216 ORTHO05D001131 3.8e-06 55.1 31 87.1
BraSC151t45705Z Brassica rapa HOM05D000216 ORTHO05D001131 3.8e-06 55.1 31 87.1
BraSC177t45754Z Brassica rapa HOM05D000216 ORTHO05D001131 3.8e-06 55.1 31 87.1
BraSC58t46479Z Brassica rapa HOM05D000216 ORTHO05D001131 3.8e-06 55.1 31 87.1
CAN.G761.5 Capsicum annuum HOM05D012609 ORTHO05D007069 3.8e-06 55.1 41 80.5
CARHR281930 Cardamine hirsuta HOM05D000216 ORTHO05D001131 3.8e-06 55.1 31 87.1
AUR62024083 Chenopodium quinoa HOM05D000216 ORTHO05D001131 3.8e-06 55.1 31 90.3
Gohir.D07G126525 Gossypium hirsutum HOM05D000216 ORTHO05D001131 3.8e-06 55.1 31 87.1
Nitab4.5_0000172g0250 Nicotiana tabacum HOM05D000216 ORTHO05D001131 3.8e-06 55.1 31 90.3
vmacro22402 Vaccinium macrocarpon HOM05D000216 ORTHO05D001131 3.8e-06 55.1 31 90.3
Nitab4.5_0007104g0040 Nicotiana tabacum HOM05D000216 ORTHO05D001131 5.0e-06 54.7 31 87.1
ECA169G0009 Erigeron canadensis HOM05D000216 ORTHO05D001131 6.5e-06 54.3 37 70.3
HanXRQChr11g0326601 Helianthus annuus HOM05D000216 ORTHO05D001131 6.5e-06 54.3 37 70.3
HanXRQChr16g0503971 Helianthus annuus HOM05D000216 ORTHO05D001131 6.5e-06 54.3 37 70.3
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 6.5e-06 54.3 37 70.3
Lsat_1_v5_gn_1_118620 Lactuca sativa HOM05D000216 ORTHO05D001131 6.5e-06 54.3 37 70.3
Lsat_1_v5_gn_1_92840 Lactuca sativa HOM05D000216 ORTHO05D001131 6.5e-06 54.3 37 70.3
Lsat_1_v5_gn_8_1800 Lactuca sativa HOM05D000216 ORTHO05D001131 6.5e-06 54.3 37 70.3
Psat5g173400 Pisum sativum HOM05D000216 ORTHO05D001131 6.5e-06 54.3 31 83.9
Psat7g026840 Pisum sativum HOM05D000216 ORTHO05D001131 6.5e-06 54.3 30 83.3
Gohir.D12G077902 Gossypium hirsutum HOM05D000216 ORTHO05D001131 8.5e-06 53.9 31 90.3
LjContig00439g0017906 Lotus japonicus HOM05D006320 ORTHO05D007069 8.5e-06 53.9 41 75.6
LjContig00446g0026709 Lotus japonicus HOM05D006320 ORTHO05D007069 8.5e-06 53.9 41 75.6
Phvul.011G124000 Phaseolus vulgaris HOM05D006320 ORTHO05D007069 8.5e-06 53.9 41 75.6


User provided reference genes

Program Settings