Gene: ATCG00190
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier ATCG00190
- Transcript Identifier ATCG00190.1
- Gene Type Coding gene
- Location ChrC : 23111-26329 : negative
Gene Family Information
- ID HOM05D000216
- #Genes/#Species 1874/88
- Phylogenetic origin
- ID ORTHO05D001131
- #Genes/#Species 478/75
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid ATCG00190.1
- symbol RPOB
- uniprot P50546
Descriptions
- Description RNA polymerase subunit beta
- Computational description RNA polymerase subunit beta (RPOB); FUNCTIONS IN: DNA-directed RNA polymerase activity, protein binding; INVOLVED IN: RNA elongation; LOCATED IN: chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), DNA-directed RNA polymerase, beta subunit, bacterial-type (InterPro:IPR010243), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase family protein (TAIR:AT4G21710.1).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0006351 | IEA | GOA Database | transcription, DNA-templated | |
GO:0006351 | IEA | InterPro | transcription, DNA-templated | |
GO:0006354 | TAS | Gene Ontology | DNA-templated transcription, elongation | 1 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0003677 | IEA | GOA Database | DNA binding | |
GO:0003677 | IEA | InterPro | DNA binding | |
GO:0032549 | IEA | Gene Ontology | ribonucleoside binding | |
GO:0032549 | IEA | InterPro | ribonucleoside binding | |
GO:0003899 | IEA | GOA Database | DNA-directed 5'-3' RNA polymerase activity | |
GO:0003899 | IBA TAS | Gene Ontology | DNA-directed 5'-3' RNA polymerase activity | 1 2 |
GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
GO:0016740 | IEA | GOA Database | transferase activity | |
GO:0016779 | IEA | GOA Database | nucleotidyltransferase activity | |
GO:0003729 | IDA | Gene Ontology | mRNA binding | 3 |
GO:0005515 | IPI | Gene Ontology | protein binding | 4 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0009536 | IEA | GOA Database | plastid | |
GO:0042644 | IDA | GOA Database | chloroplast nucleoid | |
GO:0042644 | HDA | Gene Ontology | chloroplast nucleoid | 5 |
GO:0009507 | IEA | GOA Database | chloroplast | |
GO:0009507 | IDA, HDA ISM | Gene Ontology | chloroplast | 1 6 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR007120 | DNA-directed RNA polymerase, subunit 2, hybrid-binding domain |
IPR015712 | DNA-directed RNA polymerase, subunit 2 |
IPR037033 | DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily |
IPR042107 | DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily |
IPR014724 | RNA polymerase Rpb2, OB-fold |
IPR037034 | RNA polymerase Rpb2, domain 2 superfamily |
IPR007644 | RNA polymerase, beta subunit, protrusion |
IPR007642 | RNA polymerase Rpb2, domain 2 |
IPR007641 | RNA polymerase Rpb2, domain 7 |
IPR007645 | RNA polymerase Rpb2, domain 3 |
Mapman id | Description |
---|---|
15.6.1.2.1.2 | RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.core components.core component RpoB |