Gene: ATCG00190

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier ATCG00190
  • Transcript Identifier ATCG00190.1
  • Gene Type Coding gene
  • Location ChrC : 23111-26329 : negative

Gene Family Information

  • ID HOM05D000216
  • #Genes/#Species 1874/88
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid ATCG00190.1
  • symbol RPOB
  • uniprot P50546

Descriptions

  • Description RNA polymerase subunit beta
  • Computational description RNA polymerase subunit beta (RPOB); FUNCTIONS IN: DNA-directed RNA polymerase activity, protein binding; INVOLVED IN: RNA elongation; LOCATED IN: chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), DNA-directed RNA polymerase, beta subunit, bacterial-type (InterPro:IPR010243), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase family protein (TAIR:AT4G21710.1).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006351
IEA
GOA Databasetranscription, DNA-templated
GO:0006351
IEA
InterProtranscription, DNA-templated
GO:0006354
TAS
Gene OntologyDNA-templated transcription, elongation1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0032549
IEA
Gene Ontologyribonucleoside binding
GO:0032549
IEA
InterProribonucleoside binding
GO:0003899
IEA
GOA DatabaseDNA-directed 5'-3' RNA polymerase activity
GO:0003899
IBA
TAS
Gene OntologyDNA-directed 5'-3' RNA polymerase activity1 2
GO:0003899
IEA
InterProDNA-directed 5'-3' RNA polymerase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0016779
IEA
GOA Databasenucleotidyltransferase activity
GO:0003729
IDA
Gene OntologymRNA binding3
GO:0005515
IPI
Gene Ontologyprotein binding4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009536
IEA
GOA Databaseplastid
GO:0042644
IDA
GOA Databasechloroplast nucleoid
GO:0042644
HDA
Gene Ontologychloroplast nucleoid5
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
ISM
Gene Ontologychloroplast1 6

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
IPR015712 DNA-directed RNA polymerase, subunit 2
IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily
IPR042107 DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily
IPR014724 RNA polymerase Rpb2, OB-fold
IPR037034 RNA polymerase Rpb2, domain 2 superfamily
IPR007644 RNA polymerase, beta subunit, protrusion
IPR007642 RNA polymerase Rpb2, domain 2
IPR007641 RNA polymerase Rpb2, domain 7
IPR007645 RNA polymerase Rpb2, domain 3
Mapman id Description
15.6.1.2.1.2 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.core components.core component RpoB