Gene: vmacro22402
General Information
Structural Information
- Species Vaccinium macrocarpon
- Gene Identifier vmacro22402
- Transcript Identifier vmacro22402-RA
- Gene Type Coding gene
- Location scaffold00362_Vaccinium_macrocarpon_Stevens_v1 : 60045-62456 : positive
Gene Family Information
- ID HOM05D000216
- #Genes/#Species 1874/88
- Phylogenetic origin
- ID ORTHO05D001131
- #Genes/#Species 478/75
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- id vmacro22402_Vaccinium_macrocarpon_Stevens_v1
Descriptions
- Description Similar to rpoB: DNA-directed RNA polymerase subunit beta (Nicotiana tabacum OX=4097)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006351 | IEA | InterPro | transcription, DNA-templated | |
| GO:0006354 | ISO | PLAZA Integrative Orthology | DNA-templated transcription, elongation | ATCG00190 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0032549 | IEA | InterPro | ribonucleoside binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | ATCG00190 |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | ATCG00190 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | ATCG00190 |
| GO:0042644 | ISO | PLAZA Integrative Orthology | chloroplast nucleoid | ATCG00190 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR007120 | DNA-directed RNA polymerase, subunit 2, hybrid-binding domain |
| IPR007645 | RNA polymerase Rpb2, domain 3 |
| IPR007642 | RNA polymerase Rpb2, domain 2 |
| IPR037033 | DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily |
| IPR015712 | DNA-directed RNA polymerase, subunit 2 |
| IPR007641 | RNA polymerase Rpb2, domain 7 |
| IPR037034 | RNA polymerase Rpb2, domain 2 superfamily |
| Mapman id | Description |
|---|---|
| 15.6.1.2.1.2 | RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.core components.core component RpoB |