Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1709.5 862 100.0
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1703.7 862 99.5
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1631.7 863 95.0
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1478.0 871 85.9
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 0.0e+00 1436.8 863 84.6
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1380.5 859 77.5
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1372.5 861 77.6
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1370.1 861 76.5
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1361.3 864 77.3
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1338.2 861 76.5
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1336.6 864 76.4
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1330.9 861 75.8
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1326.2 870 74.6
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1315.4 860 74.3
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1312.4 860 73.7
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1310.4 863 74.5
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1310.0 861 74.9
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1305.4 861 75.5
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1305.0 861 74.3
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1305.0 861 74.3
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1305.0 863 73.6
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1301.6 860 74.4
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1301.2 863 74.2
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1300.8 865 73.6
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1300.0 861 73.5
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1295.8 859 75.2
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1292.7 859 74.5
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1292.7 878 71.9
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1291.9 925 69.4
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1288.5 894 70.9
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1280.8 860 73.3
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1278.5 862 73.3
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1278.1 885 72.2
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1277.7 861 73.1
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1275.0 860 72.3
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1274.6 861 72.8
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1274.2 864 72.1
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1273.8 864 72.9
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1272.7 859 72.9
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1271.9 862 72.6
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1271.1 861 72.7
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1265.4 877 71.6
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1261.9 863 71.7
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1258.8 863 72.3
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1256.5 1003 64.1
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1256.1 864 71.2
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1253.4 859 71.2
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1248.4 864 70.8
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1246.9 864 70.6
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1246.1 829 73.0
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1241.1 863 70.8
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1239.6 861 69.5
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1236.9 918 68.7
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1235.7 862 69.8
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1232.6 863 70.8
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1232.6 863 70.0
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1228.8 862 69.3
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1228.0 863 69.4
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1227.2 861 70.0
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1225.7 860 68.8
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1224.2 864 69.6
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1218.4 861 69.6
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1215.3 861 69.8
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1214.1 864 68.9
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1213.0 864 68.8
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 0.0e+00 1210.7 945 65.8
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1207.6 861 68.2
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1204.5 862 68.1
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1203.3 837 70.5
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1199.5 882 69.5
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1195.6 863 68.3
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 0.0e+00 1192.6 869 67.5
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1190.6 862 67.9
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 0.0e+00 1182.9 862 67.4
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 0.0e+00 1178.7 862 67.2
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 0.0e+00 1178.3 862 67.2
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1176.8 862 67.1
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1176.0 862 67.1
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1175.2 863 67.9
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1175.2 862 67.2
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 0.0e+00 1175.2 862 66.9
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 0.0e+00 1174.5 862 66.9
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1171.4 863 67.8
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 0.0e+00 1170.6 861 67.1
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 0.0e+00 1167.1 859 67.4
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 0.0e+00 1148.3 860 66.4
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 0.0e+00 1147.1 867 65.3
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 0.0e+00 1146.3 911 63.7
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 0.0e+00 1135.2 862 65.2
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1128.6 790 71.1
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 0.0e+00 1125.2 891 64.9
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1114.4 691 78.4
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 0.0e+00 1093.6 865 62.0
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 1.4e-303 1046.2 941 59.6
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 6.9e-295 1017.3 748 69.4
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 5.5e-292 1007.7 792 65.4
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 4.5e-286 988.0 645 74.6
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 3.5e-270 935.3 877 52.5
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 1.7e-264 916.4 876 52.9
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 1.7e-261 906.4 872 51.8
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 2.4e-255 885.9 627 70.8
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 3.7e-248 862.1 485 90.1
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 2.2e-232 809.7 874 46.0
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 2.0e-217 760.0 581 67.8
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 9.9e-217 757.7 879 47.9
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 6.2e-211 738.4 559 66.4
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 2.7e-206 723.0 963 42.3
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 1.1e-202 711.1 494 71.1
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 5.1e-181 639.0 846 44.6
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 3.4e-177 626.3 481 63.0
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 2.7e-174 616.7 381 76.4
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 8.7e-173 611.7 502 60.2
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 8.8e-165 585.1 442 65.4
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 4.0e-141 506.5 327 73.7
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 5.0e-136 489.6 614 46.3
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.5e-132 478.0 378 63.5
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 8.1e-86 322.8 388 49.7
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 5.3e-85 320.1 215 70.2
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 9.9e-84 315.8 162 89.5
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 3.2e-74 284.3 711 28.1
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 3.3e-63 247.7 700 27.9
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 1.7e-54 218.8 156 69.9
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 2.2e-38 165.2 534 26.6
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 1.5e-34 152.5 658 22.6
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.5e-34 151.8 125 56.8
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 6.3e-30 137.1 120 53.3
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.4e-29 136.0 94 64.9
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 3.1e-29 134.8 97 62.9
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 4.1e-29 134.4 155 45.2
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 1.1e-18 99.8 99 48.5
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.1e-18 99.8 132 41.7
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 4.7e-17 94.4 42 95.2
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 2.8e-14 85.1 90 48.9
QL10p024418 Quercus lobata HOM05D005600 ORTHO05D006682 2.0e-07 62.4 45 64.4
Hund17892 Selenicereus undatus HOM05D026955 ORTHO05D006682 2.2e-06 58.9 28 89.3
SEGI_02402 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.7e-06 58.2 45 55.6


User provided reference genes

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