Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g028900.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.1e-37 159.5 82 100.0
Peaxi162Scf00379g00084 Petunia axillaris HOM05D000216 ORTHO05D000634 5.4e-32 140.6 82 91.5
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 5.4e-32 140.6 82 91.5
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 5.4e-32 140.6 82 91.5
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 5.4e-32 140.6 82 91.5
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 5.4e-32 140.6 82 91.5
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 5.4e-32 140.6 82 91.5
PGSC0003DMG400017664 Solanum tuberosum HOM05D000216 ORTHO05D000634 5.4e-32 140.6 82 91.5
CAN.G1180.14 Capsicum annuum HOM05D000216 ORTHO05D000634 1.2e-31 139.4 82 90.2
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 1.2e-31 139.4 82 90.2
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 4.6e-31 137.5 82 87.8
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 1.7e-30 135.6 82 87.8
Hma1.2p1_0414F.1_g147670 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 2.3e-30 135.2 82 86.6
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 2.3e-30 135.2 82 86.6
HanXRQChr00c0125g0571741 Helianthus annuus HOM05D000216 ORTHO05D000634 3.0e-30 134.8 82 87.8
HanXRQChr00c0313g0573461 Helianthus annuus HOM05D000216 ORTHO05D000634 3.0e-30 134.8 82 87.8
HanXRQChr00c0601g0576531 Helianthus annuus HOM05D000216 ORTHO05D000634 3.0e-30 134.8 82 87.8
HanXRQChr07g0188311 Helianthus annuus HOM05D000216 ORTHO05D000634 3.0e-30 134.8 82 87.8
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 3.0e-30 134.8 82 87.8
HanXRQChr10g0282521 Helianthus annuus HOM05D000216 ORTHO05D000634 3.0e-30 134.8 82 87.8
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 3.0e-30 134.8 82 87.8
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 3.0e-30 134.8 82 87.8
Hma1.2p1_3151F.1_g333240 Hydrangea macrophylla HOM05D000175 ORTHO05D000481 3.0e-30 134.8 83 85.5
Lsat_1_v5_gn_1_6760 Lactuca sativa HOM05D003214 ORTHO05D004330 3.0e-30 134.8 82 87.8
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 3.0e-30 134.8 82 87.8
Lsat_1_v5_gn_5_26601 Lactuca sativa HOM05D000216 ORTHO05D000634 3.0e-30 134.8 82 87.8
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 3.9e-30 134.4 82 87.8
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 3.9e-30 134.4 82 87.8
BraSC58t46405Z Brassica rapa HOM05D000216 ORTHO05D000634 3.9e-30 134.4 82 87.8
MELO3C001268.2 Cucumis melo HOM05D000216 ORTHO05D000634 3.9e-30 134.4 82 86.6
MELO3C028015.2 Cucumis melo HOM05D000216 ORTHO05D000634 3.9e-30 134.4 82 86.6
Gohir.A05G086066 Gossypium hirsutum HOM05D000216 ORTHO05D000634 3.9e-30 134.4 82 87.8
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 3.9e-30 134.4 82 87.8
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 5.1e-30 134.0 82 85.4
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 6.6e-30 133.7 82 85.4
CAN.G612.1 Capsicum annuum HOM05D000216 ORTHO05D000634 6.6e-30 133.7 82 87.8
Lalb_Chr09g0335361 Lupinus albus HOM05D000216 ORTHO05D000634 6.6e-30 133.7 82 85.4
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 1.1e-29 132.9 82 85.4
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 1.1e-29 132.9 82 85.4
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 1.1e-29 132.9 82 85.4
CAN.G219.16 Capsicum annuum HOM05D000743 ORTHO05D000580 1.5e-29 132.5 84 85.7
QL93p0837_0001 Quercus lobata HOM05D000216 ORTHO05D000634 1.9e-29 132.1 82 85.4
RhsimPtG0004600 Rhododendron simsii HOM05D000743 ORTHO05D000580 1.9e-29 132.1 82 87.8
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 2.5e-29 131.7 82 85.4
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 2.5e-29 131.7 82 85.4
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 2.5e-29 131.7 82 86.6
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 3.3e-29 131.3 82 85.4
Nn092s42879 Nelumbo nucifera HOM05D000216 ORTHO05D000634 3.3e-29 131.3 82 85.4
MELO3C028016.2 Cucumis melo HOM05D000216 ORTHO05D000634 4.3e-29 131.0 82 84.1
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 4.3e-29 131.0 82 84.1
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 5.6e-29 130.6 82 85.4
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 5.6e-29 130.6 82 84.1
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 7.3e-29 130.2 82 84.1
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 7.3e-29 130.2 82 84.1
Gohir.A09G103316 Gossypium hirsutum HOM05D000216 ORTHO05D000634 7.3e-29 130.2 81 86.4
HanXRQChr15g0470971 Helianthus annuus HOM05D000216 ORTHO05D000634 7.3e-29 130.2 82 85.4
Eucgr.K02695 Eucalyptus grandis HOM05D000216 ORTHO05D000634 9.6e-29 129.8 82 82.9
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 9.6e-29 129.8 82 84.1
Sc07g0006590 Simmondsia chinensis HOM05D000216 ORTHO05D000634 9.6e-29 129.8 82 84.1
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 1.3e-28 129.4 82 82.9
HanXRQChr14g0454991 Helianthus annuus HOM05D000216 ORTHO05D000634 1.3e-28 129.4 82 84.1
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 1.3e-28 129.4 82 81.7
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 1.3e-28 129.4 82 85.4
Ah.10g028500 Amaranthus hybridus HOM05D000216 ORTHO05D000634 2.1e-28 128.6 82 82.9
CiPaw.12G031000 Carya illinoinensis HOM05D000216 ORTHO05D000634 2.8e-28 128.3 82 82.9
SGA_v2.0_scaffold119G32689 Striga asiatica HOM05D000216 ORTHO05D000634 2.8e-28 128.3 82 84.1
CAN.G939.12 Capsicum annuum HOM05D000216 ORTHO05D000634 3.6e-28 127.9 78 87.2
AUR62030170 Chenopodium quinoa HOM05D000216 ORTHO05D000634 3.6e-28 127.9 82 84.1
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 4.8e-28 127.5 81 85.2
Zm00001eb314280 Zea mays HOM05D000216 ORTHO05D000634 4.8e-28 127.5 82 82.9
Zm00001eb435270 Zea mays HOM05D000216 ORTHO05D000634 4.8e-28 127.5 82 82.9
Zm00001eb435480 Zea mays HOM05D000216 ORTHO05D000634 4.8e-28 127.5 82 82.9
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 4.8e-28 127.5 82 82.9
Zm00001eb437260 Zea mays HOM05D000216 ORTHO05D000634 4.8e-28 127.5 82 82.9
CAN.G100.42 Capsicum annuum HOM05D000216 ORTHO05D000634 1.1e-27 126.3 82 81.7
AUR62021208 Chenopodium quinoa HOM05D000216 ORTHO05D000634 1.4e-27 125.9 82 82.9
Nn3g18459 Nelumbo nucifera HOM05D000216 ORTHO05D000634 3.1e-27 124.8 82 81.7
QL08p049862 Quercus lobata HOM05D000216 ORTHO05D000634 4.0e-27 124.4 78 84.6
Gohir.D12G094332 Gossypium hirsutum HOM05D000216 ORTHO05D000634 5.3e-27 124.0 82 80.5
Gorai.008G102500 Gossypium raimondii HOM05D000216 ORTHO05D000634 9.0e-27 123.2 82 79.3
Medtr7g116700 Medicago truncatula HOM05D000216 ORTHO05D000634 1.2e-26 122.9 82 79.3
Hund03956 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.6e-26 121.7 82 78.0
Hund25862 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.6e-26 121.7 82 78.0
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.6e-26 121.7 82 78.0
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.6e-26 121.7 82 78.0
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.6e-26 121.7 82 78.0
Hund27917 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.6e-26 121.7 82 78.0
Hund27996 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.6e-26 121.7 82 78.0
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.6e-26 121.7 82 78.0
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.6e-26 121.7 82 78.0
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.6e-26 121.7 82 78.0
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.6e-26 121.7 82 78.0
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.6e-26 121.7 82 78.0
AUR62042525 Chenopodium quinoa HOM05D000216 ORTHO05D000580 7.6e-26 120.2 78 82.1
MELO3C032363.2 Cucumis melo HOM05D000216 ORTHO05D000634 7.6e-26 120.2 82 76.8
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 1.7e-25 119.0 73 86.3
Medtr7g069560 Medicago truncatula HOM05D000216 ORTHO05D000634 2.2e-25 118.6 83 75.9
Sc11g0005800 Simmondsia chinensis HOM05D000216 ORTHO05D000634 2.9e-25 118.2 80 80.0
Nitab4.5_0016036g0020 Nicotiana tabacum HOM05D000216 ORTHO05D000634 3.8e-25 117.9 78 79.5
Gorai.013G017900 Gossypium raimondii HOM05D000216 ORTHO05D000634 8.4e-25 116.7 79 78.5
HanXRQChr09g0238301 Helianthus annuus HOM05D000216 ORTHO05D000634 1.2e-23 112.8 69 88.4
Psat5g134640 Pisum sativum HOM05D000216 ORTHO05D000634 1.6e-23 112.5 72 81.9
PGSC0003DMG400020297 Solanum tuberosum HOM05D000216 ORTHO05D000634 1.6e-23 112.5 78 79.5
Psat4g062520 Pisum sativum HOM05D000216 ORTHO05D003518 7.9e-23 110.2 73 78.1
CsaV3_UNG207810 Cucumis sativus L. HOM05D000216 ORTHO05D000634 1.8e-22 109.0 84 76.2
Pp3c7_4990 Physcomitrium patens HOM05D000216 ORTHO05D000634 6.7e-22 107.1 81 72.8
CSS0009554 Camellia sinensis var. sinensis HOM05D000216 ORTHO05D000634 5.6e-21 104.0 64 85.9
Lalb_Chr07g0192701 Lupinus albus HOM05D000216 ORTHO05D000634 9.6e-21 103.2 82 70.7
HanXRQChr12g0386351 Helianthus annuus HOM05D000216 ORTHO05D000634 1.6e-20 102.4 63 87.3
HanXRQChr12g0386361 Helianthus annuus HOM05D000216 ORTHO05D000634 8.1e-20 100.1 63 85.7
HPP92_007917 Vanilla planifolia HOM05D000216 ORTHO05D000634 3.1e-19 98.2 65 78.5
HanXRQChr12g0386341 Helianthus annuus HOM05D000216 ORTHO05D000634 4.0e-19 97.8 63 84.1
MD09G1229200 Malus domestica HOM05D000216 ORTHO05D003518 9.0e-19 96.7 72 73.6
HanXRQChr00c0300g0573181 Helianthus annuus HOM05D000216 ORTHO05D000634 1.2e-18 96.3 58 87.9
Nitab4.5_0001761g0220 Nicotiana tabacum HOM05D000216 ORTHO05D000634 1.5e-18 95.9 61 83.6
HanXRQChr11g0322741 Helianthus annuus HOM05D000216 ORTHO05D000634 2.6e-18 95.1 64 79.7
Lsat_1_v5_gn_3_118020 Lactuca sativa HOM05D000216 ORTHO05D000634 7.6e-18 93.6 64 79.7
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 1.9e-16 89.0 82 61.0
Lj2C1237G0 Lonicera japonica HOM05D000216 ORTHO05D003638 2.5e-16 88.6 58 81.0
CAN.G1542.7 Capsicum annuum HOM05D000216 ORTHO05D000634 7.1e-16 87.0 80 63.8
Lsat_1_v5_gn_4_163961 Lactuca sativa HOM05D000216 ORTHO05D003518 1.5e-13 79.3 60 71.7
Nitab4.5_0016007g0020 Nicotiana tabacum HOM05D000216 ORTHO05D000634 5.7e-13 77.4 47 89.4
Dinv08908 Davidia involucrata HOM05D000216 ORTHO05D000634 2.1e-12 75.5 40 90.0
SGA_v2.0_scaffold61G21222 Striga asiatica HOM05D000540 ORTHO05D000681 8.2e-12 73.6 76 61.8
Migut.F01072 Erythranthe guttata HOM05D000216 ORTHO05D000634 3.1e-11 71.6 39 84.6
SMO086G0013 Selaginella moellendorffii HOM05D000216 ORTHO05D000634 4.0e-11 71.2 82 51.2
SEGI_00070 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 1.5e-10 69.3 40 82.5
SEGI_01684 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 1.5e-10 69.3 40 82.5
SEGI_03518 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 1.5e-10 69.3 40 82.5
SEGI_05928 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 1.5e-10 69.3 40 82.5
SEGI_07796 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 1.5e-10 69.3 40 82.5
SEGI_17366 Sequoiadendron giganteum HOM05D000216 ORTHO05D004227 1.5e-10 69.3 40 82.5
SEGI_21477 Sequoiadendron giganteum HOM05D000216 ORTHO05D004227 1.5e-10 69.3 40 82.5
SEGI_22490 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 1.5e-10 69.3 40 82.5
SEGI_22758 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 1.5e-10 69.3 40 82.5
SEGI_38828 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 1.5e-10 69.3 40 82.5
SEGI_39307 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 1.5e-10 69.3 40 82.5
Oeu023333.1 Olea europaea HOM05D000216 ORTHO05D000634 2.0e-10 68.9 51 72.5
HPP92_021700 Vanilla planifolia HOM05D000216 ORTHO05D000634 2.0e-10 68.9 49 75.5
SEGI_24942 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 4.5e-10 67.8 40 80.0
SEGI_02904 Sequoiadendron giganteum HOM05D000743 ORTHO05D000580 7.6e-10 67.0 40 80.0
arahy.Tifrunner.gnm1.ann1.7FJY1D Arachis hypogaea HOM05D000216 ORTHO05D000634 1.0e-09 66.6 54 63.0
SEGI_21589 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.3e-09 66.2 40 80.0
AUR62030122 Chenopodium quinoa HOM05D000216 ORTHO05D000634 1.7e-09 65.9 54 64.8
Psat2g044360 Pisum sativum HOM05D000216 ORTHO05D000634 3.8e-09 64.7 40 72.5
SEGI_01764 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 3.8e-09 64.7 47 66.0
Hund29352 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.0e-09 64.3 40 75.0
SEGI_24812 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 5.5e-08 60.8 36 80.6
SEGI_31181 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 5.5e-08 60.8 36 80.6
SEGI_35543 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 5.5e-08 60.8 36 80.6
Lj2C1238G20 Lonicera japonica HOM05D000216 ORTHO05D000634 2.1e-07 58.9 48 62.5
SEGI_13806 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 2.1e-07 58.9 40 70.0
SEGI_23567 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 2.1e-07 58.9 36 77.8
SEGI_03649 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 7.9e-07 57.0 35 74.3
Migut.D01340 Erythranthe guttata HOM05D000216 ORTHO05D000634 1.8e-06 55.8 32 84.4
Nitab4.5_0000373g0230 Nicotiana tabacum HOM05D000216 ORTHO05D000634 3.9e-06 54.7 38 78.9


User provided reference genes

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